Variant report

Variant	rs61753704
Chromosome Location	chr8:69104619-69104620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs35141291	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35208381	0.91[ASN][1000 genomes]
rs3763527	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3829023	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331644	chr8:68806705-69189171	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv890976	chr8:69100070-69155563	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69043600-69107000	Weak transcription	Brain Substantia Nigra	brain
2	chr8:69075000-69130800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:69075200-69109200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:69075200-69113800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:69078400-69113600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:69086000-69141600	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:69087800-69108800	Weak transcription	Left Ventricle	heart
8	chr8:69090400-69126800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:69092800-69115200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:69096000-69114400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:69097400-69104800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:69097800-69110600	Weak transcription	HUVEC	blood vessel
13	chr8:69097800-69115000	Weak transcription	Fetal Stomach	stomach
14	chr8:69098000-69107600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:69100000-69113600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr8:69102000-69110600	Weak transcription	Fetal Brain Male	brain
17	chr8:69103200-69111600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:69103200-69141400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr8:69103200-69141800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:69103600-69106400	Weak transcription	Ovary	ovary
21	chr8:69103800-69107000	Weak transcription	Fetal Lung	lung
22	chr8:69104000-69105000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:69104200-69106400	Strong transcription	Adipose Nuclei	Adipose
24	chr8:69104400-69104800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr8:69104400-69105200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr8:69104400-69105600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr8:69104400-69106400	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr8:69104400-69107400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr8:69104600-69104800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr8:69104600-69104800	ZNF genes & repeats	Lung	lung
31	chr8:69104600-69105400	Strong transcription	Brain Anterior Caudate	brain
32	chr8:69104600-69105400	Strong transcription	Brain Hippocampus Middle	brain
33	chr8:69104600-69106200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr8:69104600-69106800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr8:69104600-69113800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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