Variant report

Variant	rs61758358
Chromosome Location	chr4:149344732-149344733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12511893	1.00[ASN][1000 genomes]
rs61760326	1.00[ASN][1000 genomes]
rs61762842	1.00[ASN][1000 genomes]
rs61762856	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149318800-149346600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:149320400-149351800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:149327000-149351000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:149327400-149346600	Weak transcription	Small Intestine	intestine
6	chr4:149327800-149346400	Weak transcription	Gastric	stomach
7	chr4:149327800-149346400	Weak transcription	Pancreas	Pancrea
8	chr4:149335400-149346400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr4:149335400-149349200	Weak transcription	Fetal Heart	heart
10	chr4:149338600-149354800	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:149340200-149356800	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:149342000-149346200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:149342200-149346400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:149342200-149346400	Weak transcription	Right Atrium	heart
15	chr4:149342200-149346400	Weak transcription	Stomach Mucosa	stomach
16	chr4:149342200-149346600	Weak transcription	Left Ventricle	heart
17	chr4:149342200-149346600	Weak transcription	Psoas Muscle	Psoas
18	chr4:149342800-149346400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr4:149342800-149356000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:149343600-149344800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr4:149343600-149344800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr4:149343600-149345400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr4:149343800-149344800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:149343800-149344800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr4:149343800-149345800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr4:149343800-149347800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr4:149344600-149344800	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr4:149344600-149349800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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