Variant report

Variant	rs61759608
Chromosome Location	chr12:25405708-25405709
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10400492	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047859	1.00[EUR][1000 genomes]
rs11047869	1.00[EUR][1000 genomes]
rs11047898	1.00[EUR][1000 genomes]
rs11829456	1.00[EUR][1000 genomes]
rs11833781	1.00[EUR][1000 genomes]
rs11835872	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307064	1.00[EUR][1000 genomes]
rs12313763	1.00[EUR][1000 genomes]
rs34164267	1.00[EUR][1000 genomes]
rs61759613	1.00[EUR][1000 genomes]
rs61759631	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61761086	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61761090	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61761092	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61761147	0.89[AMR][1000 genomes]
rs61761151	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61762363	1.00[EUR][1000 genomes]
rs61764371	1.00[EUR][1000 genomes]
rs61764377	1.00[EUR][1000 genomes]
rs7304274	1.00[EUR][1000 genomes]
rs7953861	1.00[EUR][1000 genomes]
rs7972282	1.00[EUR][1000 genomes]
rs7978771	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898922	chr12:25274593-25408047	Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv898926	chr12:25367669-25408047	Weak transcription Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv898927	chr12:25389220-25408047	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25404400-25406800	Weak transcription	Gastric	stomach
2	chr12:25404600-25406800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:25404600-25407200	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:25404600-25407200	Weak transcription	Pancreas	Pancrea
5	chr12:25404800-25405800	Enhancers	Primary hematopoietic stem cells	blood
6	chr12:25404800-25406000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr12:25404800-25406000	Weak transcription	GM12878-XiMat	blood
8	chr12:25404800-25407000	Weak transcription	HSMMtube	muscle
9	chr12:25404800-25407200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:25405000-25406200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr12:25405000-25406200	Enhancers	Hela-S3	cervix
12	chr12:25405000-25406600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:25405000-25406800	Weak transcription	Fetal Lung	lung
14	chr12:25405000-25408600	Weak transcription	Liver	Liver
15	chr12:25405000-25408600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr12:25405000-25409600	Weak transcription	Fetal Kidney	kidney
17	chr12:25405000-25409800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:25405000-25409800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr12:25405000-25410400	Enhancers	HepG2	liver
20	chr12:25405200-25406400	Weak transcription	Fetal Intestine Large	intestine
21	chr12:25405200-25406400	Weak transcription	Fetal Intestine Small	intestine
22	chr12:25405200-25406600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:25405200-25406800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr12:25405200-25406800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr12:25405200-25407200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:25405200-25407600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr12:25405200-25409000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr12:25405200-25409600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr12:25405600-25406600	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr12:25405600-25408800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr12:25405600-25409600	Weak transcription	Placenta	Placenta

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