Variant report
Variant | rs61766442 |
---|---|
Chromosome Location | chr1:80114169-80114170 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11162774 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11162776 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11162778 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11576779 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11579043 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11582201 | 0.84[ASN][1000 genomes] |
rs11583289 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11586507 | 0.84[ASN][1000 genomes] |
rs11588642 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12059261 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12095709 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12239226 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17421156 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs17421205 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs17421310 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17422248 | 0.84[ASN][1000 genomes] |
rs17455295 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17455371 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1813054 | 0.84[ASN][1000 genomes] |
rs2091124 | 0.84[ASN][1000 genomes] |
rs2127438 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2185319 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2388920 | 0.84[ASN][1000 genomes] |
rs34107187 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4015403 | 0.84[ASN][1000 genomes] |
rs56120881 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56270683 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56353519 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56402550 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61766435 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs61766436 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61766438 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61766441 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61768589 | 0.84[ASN][1000 genomes] |
rs61768596 | 0.84[ASN][1000 genomes] |
rs61768597 | 0.84[ASN][1000 genomes] |
rs61768598 | 0.84[ASN][1000 genomes] |
rs722589 | 0.84[ASN][1000 genomes] |
rs72682474 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9700883 | 0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1012296 | chr1:79945395-80300216 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv546637 | chr1:79984748-80159969 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv1012286 | chr1:80057078-81005153 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv535018 | chr1:80057078-81005153 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
5 | nsv1000792 | chr1:80076146-81015283 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
6 | esv3383606 | chr1:80113514-80115512 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
7 | esv2009346 | chr1:80113993-80114689 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
8 | esv3320281 | chr1:80114061-80114593 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
9 | esv3413035 | chr1:80114085-80114577 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
10 | esv3566 | chr1:80114092-80114545 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
11 | esv3486467 | chr1:80114093-80114601 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
12 | esv3486469 | chr1:80114099-80114527 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
13 | esv3320283 | chr1:80114108-80114555 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
14 | esv3486468 | chr1:80114114-80114539 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
15 | esv3320282 | chr1:80114117-80114559 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
16 | esv3320280 | chr1:80114119-80114517 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
17 | esv3486470 | chr1:80114129-80114540 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
18 | esv3450875 | chr1:80114134-80114509 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:80113000-80116400 | Weak transcription | Fetal Heart | heart |
2 | chr1:80113000-80118200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
3 | chr1:80113200-80123200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |