Variant report

Variant	rs61768602
Chromosome Location	chr1:84857359-84857360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10082174	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11163951	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12140364	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12752696	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3768256	0.83[ASN][1000 genomes]
rs633294	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84853600-84857800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:84853600-84858800	Weak transcription	HUVEC	blood vessel
3	chr1:84857000-84858000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:84857200-84857600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:84857200-84857800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:84857200-84858000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:84857200-84858000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:84857200-84858000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:84857200-84858000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:84857200-84858000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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