Variant report

Variant	rs61769480
Chromosome Location	chr1:85769656-85769657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17125070	0.82[EUR][1000 genomes]
rs61771976	0.80[EUR][1000 genomes]
rs61771977	0.80[EUR][1000 genomes]
rs61771978	0.80[EUR][1000 genomes]
rs61771979	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85743000-85773600	Weak transcription	Right Atrium	heart
2	chr1:85764400-85774000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr1:85764800-85770400	Weak transcription	NHDF-Ad	bronchial
4	chr1:85765200-85773600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:85765200-85773600	Weak transcription	HMEC	breast
6	chr1:85768000-85769800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:85768200-85773600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:85768200-85773600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:85768400-85772600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:85768400-85773400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:85769200-85771800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:85769200-85773600	Weak transcription	Adipose Nuclei	Adipose
13	chr1:85769400-85773600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:85769400-85773800	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:85769400-85773800	Weak transcription	Fetal Stomach	stomach
16	chr1:85769600-85774200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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