Variant report

Variant	rs61770105
Chromosome Location	chr1:62188979-62188980
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:62172803..62176394-chr1:62188013..62191041,5	K562	blood:
2	chr1:62173473..62177807-chr1:62188633..62191997,6	K562	blood:
3	chr1:62188914..62195188-chr1:62202056..62212232,19	MCF-7	breast:
4	chr1:62187463..62192137-chr1:62206143..62210486,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271200	Chromatin interaction
ENSG00000162604	Chromatin interaction
ENSG00000132849	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17312971	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35138123	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61770086	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61770106	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv994970	chr1:61693951-62199657	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1000294	chr1:61746280-62350718	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62138800-62189600	Weak transcription	Psoas Muscle	Psoas
2	chr1:62140000-62189000	Weak transcription	NHLF	lung
3	chr1:62146200-62190200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:62158600-62189800	Weak transcription	Pancreas	Pancrea
5	chr1:62165000-62189800	Weak transcription	Aorta	Aorta
6	chr1:62165400-62189400	Weak transcription	Fetal Brain Male	brain
7	chr1:62165400-62189600	Weak transcription	Right Ventricle	heart
8	chr1:62165400-62189800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:62166400-62189400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr1:62166600-62189400	Weak transcription	A549	lung
11	chr1:62166800-62189400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr1:62172000-62189400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:62172000-62189800	Weak transcription	Gastric	stomach
14	chr1:62173200-62189600	Weak transcription	Colonic Mucosa	Colon
15	chr1:62174000-62189600	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:62174200-62189000	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:62174400-62189800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:62174400-62189800	Weak transcription	Esophagus	oesophagus
19	chr1:62174600-62189200	Weak transcription	HepG2	liver
20	chr1:62174600-62190200	Weak transcription	Small Intestine	intestine
21	chr1:62174800-62189200	Weak transcription	Fetal Brain Female	brain
22	chr1:62174800-62189400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr1:62174800-62189600	Weak transcription	Primary B cells from cord blood	blood
24	chr1:62174800-62189600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:62174800-62189600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:62174800-62189600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:62174800-62189600	Weak transcription	Left Ventricle	heart
28	chr1:62174800-62189600	Weak transcription	Osteobl	bone
29	chr1:62174800-62189800	Weak transcription	Lung	lung
30	chr1:62174800-62189800	Weak transcription	HSMMtube	muscle
31	chr1:62174800-62190000	Weak transcription	Ovary	ovary
32	chr1:62174800-62190400	Weak transcription	Spleen	Spleen
33	chr1:62175000-62189200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr1:62175000-62189400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr1:62175000-62189400	Weak transcription	Fetal Kidney	kidney
36	chr1:62175000-62189600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr1:62175000-62189800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr1:62175000-62189800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr1:62175200-62189200	Weak transcription	HMEC	breast
40	chr1:62175200-62189400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr1:62175200-62189400	Weak transcription	Adipose Nuclei	Adipose
42	chr1:62175200-62189400	Weak transcription	Hela-S3	cervix
43	chr1:62175200-62189600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr1:62175200-62189800	Weak transcription	Stomach Mucosa	stomach
45	chr1:62175200-62190000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:62175400-62189400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr1:62175400-62189400	Weak transcription	Fetal Lung	lung
48	chr1:62175400-62189600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr1:62175400-62189600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr1:62175400-62189600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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