Variant report

Variant	rs61771321
Chromosome Location	chr1:76544416-76544417
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1146660	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1146664	0.95[EUR][1000 genomes]
rs1146665	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11585383	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251464	0.87[EUR][1000 genomes]
rs1251465	0.96[ASN][1000 genomes]
rs1251577	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1251578	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1335740	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17660501	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17660531	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2043799	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55811448	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56320696	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6692547	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535776	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7545733	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv871862	chr1:76525783-76598209	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76541000-76546600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:76541200-76546600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:76541200-76551200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:76541400-76545400	Weak transcription	Lung	lung
5	chr1:76541600-76545400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:76541600-76545400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:76541600-76548000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:76541600-76550000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:76541800-76545200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:76541800-76545200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:76541800-76546200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:76541800-76547400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:76542000-76545600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:76542000-76547400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:76542200-76545200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr1:76542200-76545400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:76542200-76545800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:76542200-76546200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:76542200-76546400	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:76542200-76546400	Weak transcription	Fetal Muscle Leg	muscle
21	chr1:76542200-76546600	Weak transcription	Fetal Brain Female	brain
22	chr1:76542200-76553200	Weak transcription	Fetal Intestine Large	intestine
23	chr1:76542400-76545400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr1:76542400-76545800	Weak transcription	Fetal Lung	lung
25	chr1:76542400-76546200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:76542400-76546400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr1:76542400-76550000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr1:76542800-76545400	Weak transcription	Fetal Stomach	stomach
29	chr1:76542800-76545400	Weak transcription	Left Ventricle	heart
30	chr1:76542800-76546400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:76542800-76546400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr1:76542800-76547200	Weak transcription	Brain Angular Gyrus	brain
33	chr1:76542800-76572000	Weak transcription	Primary B cells from cord blood	blood
34	chr1:76543000-76546200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr1:76543200-76545200	Weak transcription	Brain Anterior Caudate	brain
36	chr1:76543200-76545200	Weak transcription	Brain Hippocampus Middle	brain
37	chr1:76543200-76546400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr1:76543400-76545400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr1:76544200-76545200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:76544200-76545200	Weak transcription	Brain Substantia Nigra	brain
41	chr1:76544400-76546400	Weak transcription	Brain Cingulate Gyrus	brain

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