Variant report

Variant	rs61771338
Chromosome Location	chr1:76616980-76616981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76596952..76598504-chr1:76616645..76619490,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11582447	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12057582	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12057667	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12122853	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17668087	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs518915	0.92[EUR][1000 genomes]
rs61771337	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76599800-76620200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:76606200-76620000	Weak transcription	Spleen	Spleen
4	chr1:76608000-76620200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:76608200-76620200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:76608200-76620200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:76611000-76620000	Weak transcription	Fetal Lung	lung
8	chr1:76613200-76617400	Enhancers	Brain Substantia Nigra	brain
9	chr1:76614400-76617000	Enhancers	Brain Cingulate Gyrus	brain
10	chr1:76615200-76617000	Enhancers	Brain Hippocampus Middle	brain
11	chr1:76615600-76617200	Enhancers	Adipose Nuclei	Adipose
12	chr1:76615600-76617600	Enhancers	Left Ventricle	heart
13	chr1:76616400-76617000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:76616400-76617400	Enhancers	Right Atrium	heart
15	chr1:76616400-76623600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:76616600-76617000	Enhancers	Fetal Stomach	stomach
17	chr1:76616600-76619600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:76616600-76619800	Weak transcription	Brain Angular Gyrus	brain
19	chr1:76616600-76620000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr1:76616600-76620000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:76616600-76620000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:76616800-76617400	Enhancers	Fetal Muscle Trunk	muscle
23	chr1:76616800-76618400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:76616800-76619600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:76616800-76619800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:76616800-76619800	Weak transcription	Lung	lung
27	chr1:76616800-76620000	Weak transcription	Brain Anterior Caudate	brain
28	chr1:76616800-76620000	Weak transcription	Fetal Muscle Leg	muscle
29	chr1:76616800-76620000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr1:76616800-76620200	Weak transcription	Esophagus	oesophagus

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