Variant report

Variant	rs61773231
Chromosome Location	chr1:95155307-95155308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95116283..95118037-chr1:95153158..95155389,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC44A3-2	chr1:95153449-95155440	XLOC_000303

Variant related genes	Relation type
ENSG00000232857	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10218699	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10218700	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10218701	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10493877	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10782990	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10782991	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10874879	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10874880	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10874881	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10874882	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10874883	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10874884	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11165209	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11165210	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11165211	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11165212	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11165215	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11165217	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11165218	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12085094	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12089652	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12116841	0.81[ASN][1000 genomes]
rs12120217	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12127717	0.87[ASN][1000 genomes]
rs12138432	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12145601	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12725936	0.83[AMR][1000 genomes]
rs12736683	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12739283	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12739612	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12739646	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12743410	0.83[AMR][1000 genomes]
rs12750395	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12757198	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12757945	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12760023	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12760228	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12760666	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1493277	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1772893	0.84[ASN][1000 genomes]
rs1778190	0.83[ASN][1000 genomes]
rs1994850	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2040074	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2040075	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2040076	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2040077	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2391384	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2391385	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3956597	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4000655	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4000656	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4000657	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4000658	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4240958	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4240959	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4240960	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4274076	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4319342	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4338361	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4394665	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4567290	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4598496	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4847337	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4847338	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4847339	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4847340	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6663811	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7412205	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7416454	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs841340	0.85[ASN][1000 genomes]
rs841359	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs841361	0.84[ASN][1000 genomes]
rs841362	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs841366	0.85[ASN][1000 genomes]
rs859337	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs923815	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs964213	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	esv2756851	chr1:95119790-95158603	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2758950	chr1:95119790-95158603	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv998738	chr1:95126536-95155399	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv871001	chr1:95128546-95171891	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1013700	chr1:95130666-95155387	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1013561	chr1:95130666-95155399	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1012925	chr1:95130666-95155534	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv999580	chr1:95130666-95155585	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv2764194	chr1:95130678-95155597	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1002560	chr1:95130754-95155387	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1013295	chr1:95130754-95155399	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv442927	chr1:95130766-95155399	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv1011128	chr1:95130788-95155399	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv1000486	chr1:95131596-95155399	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	esv12694	chr1:95134798-95156000	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv871916	chr1:95143999-95189230	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
18	nsv437228	chr1:95146564-95164436	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95126800-95164200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:95140000-95155600	Weak transcription	HSMMtube	muscle
3	chr1:95142800-95167800	Weak transcription	Pancreas	Pancrea
4	chr1:95145200-95157200	Weak transcription	Fetal Intestine Large	intestine
5	chr1:95145200-95163600	Weak transcription	Stomach Mucosa	stomach
6	chr1:95151200-95160600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:95151400-95165800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:95152800-95156000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:95152800-95195000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr1:95153000-95155400	Weak transcription	NHEK	skin
11	chr1:95153000-95157000	Weak transcription	Fetal Intestine Small	intestine
12	chr1:95153000-95157600	Weak transcription	Right Atrium	heart
13	chr1:95153000-95173000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:95153400-95156000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:95153400-95167600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:95153800-95156000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:95154000-95155600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr1:95154000-95156000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:95154000-95156200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr1:95154000-95157600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr1:95154200-95155400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:95154200-95156000	Enhancers	HSMM	muscle
23	chr1:95154200-95157200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:95154400-95156000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:95154400-95156200	Enhancers	NHDF-Ad	bronchial
26	chr1:95154400-95157000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:95154400-95157200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr1:95154600-95156000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr1:95154600-95156200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr1:95154600-95156200	Enhancers	Ovary	ovary
31	chr1:95154600-95156400	Enhancers	Osteobl	bone
32	chr1:95154600-95157000	Enhancers	Adipose Nuclei	Adipose
33	chr1:95154800-95155800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr1:95154800-95155800	Weak transcription	NH-A	brain
35	chr1:95154800-95155800	Weak transcription	NHLF	lung
36	chr1:95154800-95156400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:95155000-95155600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr1:95155000-95155600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr1:95155000-95156200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr1:95155000-95156600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr1:95155000-95160000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:95155000-95163600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:95155200-95155600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:95155200-95155800	Weak transcription	Stomach Smooth Muscle	stomach

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