Variant report

Variant	rs61776093
Chromosome Location	chr1:55910019-55910020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10493198	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11206586	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12066898	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12128309	0.96[ASN][1000 genomes]
rs12561774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12564128	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12564538	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12566453	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12566719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12569322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59432080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61774682	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61776090	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61776091	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61776092	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61776095	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61776099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7532502	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7555620	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55906800-55914600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:55907000-55915600	Enhancers	NHDF-Ad	bronchial
3	chr1:55907800-55912600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:55907800-55915800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:55908000-55915000	Enhancers	Hela-S3	cervix
6	chr1:55908200-55910400	Enhancers	A549	lung
7	chr1:55908600-55910400	Enhancers	Fetal Muscle Leg	muscle
8	chr1:55908600-55911000	Enhancers	Osteobl	bone
9	chr1:55908800-55910200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr1:55908800-55910400	Enhancers	Adipose Nuclei	Adipose
11	chr1:55908800-55910400	Enhancers	Stomach Smooth Muscle	stomach
12	chr1:55908800-55910400	Enhancers	HSMM	muscle
13	chr1:55908800-55910600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:55908800-55911600	Enhancers	Colon Smooth Muscle	Colon
15	chr1:55908800-55914400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:55908800-55915000	Enhancers	NHLF	lung
17	chr1:55909000-55911400	Enhancers	Placenta	Placenta
18	chr1:55909000-55912600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:55909200-55910400	Enhancers	Fetal Muscle Trunk	muscle
20	chr1:55909200-55910400	Enhancers	HUVEC	blood vessel
21	chr1:55909200-55910600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:55909400-55910200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:55909400-55910400	Weak transcription	Right Atrium	heart
24	chr1:55909400-55910400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr1:55909400-55910800	Weak transcription	Thymus	Thymus
26	chr1:55909400-55913000	Weak transcription	HepG2	liver
27	chr1:55909600-55911600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:55909600-55913800	Weak transcription	Fetal Lung	lung
29	chr1:55909600-55913800	Weak transcription	HMEC	breast
30	chr1:55909800-55910400	Enhancers	Psoas Muscle	Psoas
31	chr1:55910000-55910600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:55910000-55910600	Enhancers	K562	blood
33	chr1:55910000-55911800	Weak transcription	HSMMtube	muscle
34	chr1:55910000-55911800	Weak transcription	NH-A	brain
35	chr1:55910000-55916600	Weak transcription	Aorta	Aorta

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