Variant report

Variant	rs61777209
Chromosome Location	chr1:10623786-10623787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10622081..10624385-chr1:10637309..10640742,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10436982	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12057729	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12063215	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12090079	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12091086	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13375411	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17035154	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2274986	0.86[EUR][1000 genomes]
rs28435785	0.94[ASN][1000 genomes]
rs28522839	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28663566	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57986045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61776020	0.86[EUR][1000 genomes]
rs61776039	0.86[EUR][1000 genomes]
rs61776041	0.86[EUR][1000 genomes]
rs61776042	0.86[EUR][1000 genomes]
rs61776043	0.86[EUR][1000 genomes]
rs61776045	0.93[EUR][1000 genomes]
rs61776260	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61776261	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61777175	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61777176	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61777178	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61777205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6540934	1.00[EUR][1000 genomes]
rs6540935	1.00[EUR][1000 genomes]
rs6664032	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6668910	0.82[EUR][1000 genomes]
rs6679456	0.93[EUR][1000 genomes]
rs6680568	0.93[EUR][1000 genomes]
rs7512333	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7524983	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7534960	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7551790	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9661820	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1015079	chr1:10611403-10645176	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10589400-10664800	Weak transcription	Aorta	Aorta
2	chr1:10591000-10639400	Weak transcription	Hela-S3	cervix
3	chr1:10591400-10629200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:10602000-10639600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:10602600-10624000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:10603000-10659000	Weak transcription	Primary B cells from cord blood	blood
7	chr1:10604600-10623800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:10605000-10659000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr1:10606000-10638000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr1:10607600-10636800	Weak transcription	Primary T cells from cord blood	blood
11	chr1:10607600-10636800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:10607600-10641400	Weak transcription	Lung	lung
13	chr1:10609800-10624200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr1:10611800-10624000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr1:10616400-10633600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:10616400-10638200	Weak transcription	Esophagus	oesophagus
17	chr1:10616600-10626000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:10616800-10627200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:10617000-10624200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:10617000-10627000	Weak transcription	HSMMtube	muscle
21	chr1:10621200-10624000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:10622000-10624000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:10622200-10624000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:10622400-10626000	Weak transcription	Osteobl	bone
25	chr1:10622800-10634800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:10623200-10623800	ZNF genes & repeats	Fetal Intestine Large	intestine
27	chr1:10623200-10624000	ZNF genes & repeats	Fetal Intestine Small	intestine
28	chr1:10623600-10645600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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