Variant report

Variant	rs61784293
Chromosome Location	chr1:70557721-70557722
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:70552623..70554751-chr1:70557187..70559159,2	K562	blood:

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1009125	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10493469	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10493470	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10493471	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10493472	0.85[EUR][1000 genomes]
rs11799572	0.85[EUR][1000 genomes]
rs11810684	0.85[EUR][1000 genomes]
rs11810719	0.85[EUR][1000 genomes]
rs11810721	0.85[EUR][1000 genomes]
rs1353467	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1472351	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1576117	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1590724	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17131148	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17131150	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17131151	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17131155	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17131156	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17131157	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17131158	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17131159	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17131161	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17131166	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17131170	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17131177	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17131178	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17131182	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17131183	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17131186	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17131189	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17131190	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17131191	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17131193	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17131196	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131201	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131202	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17131204	0.87[EUR][1000 genomes]
rs17131207	0.94[EUR][1000 genomes]
rs17131208	0.85[EUR][1000 genomes]
rs17131209	0.85[EUR][1000 genomes]
rs17131212	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17131214	0.94[EUR][1000 genomes]
rs17131215	0.85[EUR][1000 genomes]
rs17131217	0.94[EUR][1000 genomes]
rs17131218	0.85[EUR][1000 genomes]
rs17131219	0.83[EUR][1000 genomes]
rs17131220	0.83[EUR][1000 genomes]
rs2031710	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2101889	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2220958	0.87[EUR][1000 genomes]
rs2220959	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2421317	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2421318	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421319	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2421320	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3738119	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4649906	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4649907	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4650017	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4650018	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4650019	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4650020	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4650022	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4650026	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4650027	0.85[EUR][1000 genomes]
rs4650028	0.85[EUR][1000 genomes]
rs55903530	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55919205	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55925122	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55992448	0.85[EUR][1000 genomes]
rs56032859	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56090839	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56108385	0.85[EUR][1000 genomes]
rs56194840	0.85[EUR][1000 genomes]
rs56245237	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56397443	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56410601	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57502803	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57977150	0.85[EUR][1000 genomes]
rs58382572	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59199273	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60383564	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61782629	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61782630	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61782632	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61782633	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61782637	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61782643	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61782645	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61782646	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61784278	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61784279	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61784281	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61784282	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61784283	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61784284	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61784289	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61784290	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61784291	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61784292	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61784297	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61784310	0.84[EUR][1000 genomes]
rs61784313	0.83[EUR][1000 genomes]
rs6690627	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6694380	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs724681	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945241	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74085938	0.85[EUR][1000 genomes]
rs74085939	0.85[EUR][1000 genomes]
rs7413084	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7511650	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7521532	0.85[EUR][1000 genomes]
rs7531630	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7538198	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv461806	chr1:70494216-70566981	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546454	chr1:70494216-70566981	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70546600-70559400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:70550200-70558400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:70550400-70558200	Weak transcription	Fetal Brain Male	brain
4	chr1:70555800-70558600	Enhancers	NHLF	lung
5	chr1:70555800-70560000	Enhancers	NHDF-Ad	bronchial
6	chr1:70556800-70557800	Weak transcription	Brain Germinal Matrix	brain
7	chr1:70557000-70599600	Weak transcription	Fetal Brain Female	brain
8	chr1:70557200-70559000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr1:70557400-70558000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:70557400-70558200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:70557600-70557800	Enhancers	Brain Hippocampus Middle	brain
12	chr1:70557600-70558000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:70557600-70558000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:70557600-70558800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:70557600-70559200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links