Variant report

Variant	rs61784657
Chromosome Location	chr1:77783600-77783601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77781240..77784199-chr1:77786063..77789429,3	K562	blood:
2	chr1:77783248..77784867-chr1:78146400..78148861,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000036549	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11162318	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584919	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11590456	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1167202	0.92[EUR][1000 genomes]
rs1167212	0.92[EUR][1000 genomes]
rs12124822	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12125503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126330	0.88[EUR][1000 genomes]
rs12128049	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132273	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135843	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136415	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140227	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141929	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453981	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4949791	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61096452	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61783074	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1003714	chr1:77756861-77949309	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	esv2756848	chr1:77775014-77788462	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2758945	chr1:77775014-77788462	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77754400-77785800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:77755800-77788200	Weak transcription	HSMMtube	muscle
3	chr1:77774000-77790400	Weak transcription	Brain Substantia Nigra	brain
4	chr1:77774800-77787200	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:77777000-77794600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:77779200-77784600	Weak transcription	Brain Angular Gyrus	brain
7	chr1:77779400-77794400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:77779600-77786200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:77779600-77787200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:77779600-77794600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:77781400-77790000	Enhancers	NHDF-Ad	bronchial
12	chr1:77781800-77784600	Weak transcription	Brain Anterior Caudate	brain
13	chr1:77782000-77784000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:77782000-77787400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:77782000-77787400	Weak transcription	HMEC	breast
16	chr1:77782200-77784600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:77782400-77784800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:77782400-77787600	Weak transcription	NHEK	skin
19	chr1:77782800-77787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:77783000-77783800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:77783000-77784000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr1:77783000-77784400	Weak transcription	Osteobl	bone
23	chr1:77783000-77784600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:77783000-77784600	Weak transcription	NHLF	lung
25	chr1:77783200-77784800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:77783200-77785200	Strong transcription	Primary T cells from cord blood	blood
27	chr1:77783400-77784000	Weak transcription	HSMM	muscle

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