Variant report

Variant	rs61784835
Chromosome Location	chr1:47974123-47974124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47958683..47962723-chr1:47971589..47974688,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6658111	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001779	chr1:47884229-48111485	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv871299	chr1:47889417-48057890	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2755190	chr1:47907580-48048680	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47973000-47974800	Flanking Active TSS	Liver	Liver
2	chr1:47973200-47975000	Enhancers	Lung	lung
3	chr1:47973400-47974200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
4	chr1:47973400-47974200	Bivalent/Poised TSS	NH-A	brain
5	chr1:47973400-47974400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr1:47973400-47974400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr1:47973400-47974400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
8	chr1:47973400-47974600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
9	chr1:47973400-47974600	Flanking Active TSS	Right Ventricle	heart
10	chr1:47973400-47974800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr1:47973400-47974800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:47973400-47975200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:47973400-47975400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr1:47973600-47974200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr1:47973600-47974200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:47973600-47974200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:47973600-47974200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:47973600-47974200	Bivalent/Poised TSS	Primary T killer naive cells fromperipheralblood	blood
19	chr1:47973600-47974200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:47973600-47974200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
21	chr1:47973600-47974200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
22	chr1:47973600-47974200	Active TSS	Colonic Mucosa	Colon
23	chr1:47973600-47974200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
24	chr1:47973600-47974200	Bivalent/Poised TSS	Left Ventricle	heart
25	chr1:47973600-47974200	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr1:47973600-47974200	Active TSS	Rectal Mucosa Donor 31	rectum
27	chr1:47973600-47974400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
28	chr1:47973600-47974400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
29	chr1:47973600-47974400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
30	chr1:47973600-47974400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr1:47973600-47974400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:47973600-47974400	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr1:47973600-47974400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
34	chr1:47973600-47974400	Bivalent/Poised TSS	Psoas Muscle	Psoas
35	chr1:47973600-47974400	Active TSS	Right Atrium	heart
36	chr1:47973600-47974400	Active TSS	A549	lung
37	chr1:47973600-47974400	Flanking Bivalent TSS/Enh	HepG2	liver
38	chr1:47973600-47974400	Bivalent/Poised TSS	HSMM	muscle
39	chr1:47973600-47974400	Bivalent/Poised TSS	K562	blood
40	chr1:47973600-47974600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:47973600-47974600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr1:47973600-47974600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
43	chr1:47973600-47974600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:47973600-47974600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr1:47973600-47974600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr1:47973600-47974600	Active TSS	Aorta	Aorta
47	chr1:47973600-47974600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
48	chr1:47973600-47974800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr1:47973600-47974800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
50	chr1:47973600-47974800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links