Variant report

Variant	rs61785160
Chromosome Location	chr1:85939827-85939828
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85929647..85931908-chr1:85937846..85939835,2	MCF-7	breast:
2	chr1:85930255..85933198-chr1:85937811..85940494,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273264	Chromatin interaction
ENSG00000153904	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17127623	0.88[EUR][1000 genomes]
rs17127637	0.87[EUR][1000 genomes]
rs3738111	0.89[EUR][1000 genomes]
rs4949902	0.83[EUR][1000 genomes]
rs4949903	0.80[EUR][1000 genomes]
rs4949906	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61769518	0.83[EUR][1000 genomes]
rs61769519	0.83[EUR][1000 genomes]
rs61783053	0.88[EUR][1000 genomes]
rs61783054	0.88[EUR][1000 genomes]
rs61783058	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs761602	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv830470	chr1:85820775-86014080	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85931200-85941600	Weak transcription	Aorta	Aorta
2	chr1:85931200-85942200	Weak transcription	Esophagus	oesophagus
3	chr1:85931800-85942400	Weak transcription	NHLF	lung
4	chr1:85931800-85956000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:85931800-85960000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:85932000-85961400	Weak transcription	Fetal Stomach	stomach
7	chr1:85932200-85945400	Weak transcription	HUVEC	blood vessel
8	chr1:85933000-85943200	Strong transcription	HSMM	muscle
9	chr1:85933600-85943400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:85933800-85950200	Weak transcription	NHDF-Ad	bronchial
11	chr1:85934000-85950000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:85937200-85940200	Weak transcription	NH-A	brain
13	chr1:85937800-85940000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:85938800-85940400	Strong transcription	HSMMtube	muscle
15	chr1:85939200-85940600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:85939400-85940000	Enhancers	A549	lung
17	chr1:85939400-85940800	Genic enhancers	Osteobl	bone
18	chr1:85939400-85943000	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr1:85939600-85940000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr1:85939600-85940000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:85939600-85940200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:85939600-85946800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:85939800-85945400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:85939800-85950200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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