Variant report

Variant	rs61786356
Chromosome Location	chr1:97772701-97772702
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10783059	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10783060	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11808765	0.89[EUR][1000 genomes]
rs1609519	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28696953	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs471581	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs499009	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs507170	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs526645	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs553388	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55651621	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61786317	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61786318	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61786353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61786357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61787962	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61787963	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61787976	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61787980	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61787981	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs628959	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs644023	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6660936	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs693680	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72726678	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518848	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7524482	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7526933	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7556387	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7556439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827500	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv530048	chr1:97457175-98031501	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007950	chr1:97466488-98021146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv533039	chr1:97665736-98343102	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv869751	chr1:97749598-97790476	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97724000-97773200	Weak transcription	Lung	lung
2	chr1:97745000-97773400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:97745200-97773400	Weak transcription	NHDF-Ad	bronchial
4	chr1:97753400-97773200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:97754200-97773200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:97756800-97773200	Weak transcription	Small Intestine	intestine
7	chr1:97757800-97773200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:97757800-97773800	Weak transcription	Osteobl	bone
9	chr1:97759800-97776000	Weak transcription	Pancreas	Pancrea
10	chr1:97769200-97781800	Weak transcription	NHLF	lung
11	chr1:97770400-97797600	Weak transcription	HSMM	muscle
12	chr1:97770600-97772800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:97771000-97773400	Weak transcription	Adipose Nuclei	Adipose
14	chr1:97771000-97773800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:97771000-97774400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:97771000-97777000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:97771000-97782400	Weak transcription	Primary B cells from cord blood	blood
18	chr1:97771400-97781400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:97771800-97773400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr1:97771800-97773800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:97772000-97773200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:97772000-97773800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:97772000-97773800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr1:97772000-97774400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr1:97772000-97780200	Weak transcription	Primary T cells from cord blood	blood
26	chr1:97772000-97780400	Weak transcription	Liver	Liver
27	chr1:97772000-97781200	Weak transcription	Dnd41	blood
28	chr1:97772200-97773800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr1:97772200-97775000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr1:97772200-97775200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr1:97772200-97779800	Weak transcription	Primary monocytes fromperipheralblood	blood

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