Variant report

Variant	rs61786758
Chromosome Location	chr1:98568519-98568520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61785940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1009621	chr1:98435638-98599284	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv830736	chr1:98488491-98663726	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv432531	chr1:98524979-98604179	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv823631	chr1:98554257-98687985	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv462583	chr1:98554409-98645213	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv546875	chr1:98554409-98645213	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98549400-98569400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:98553200-98569600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:98560600-98569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:98562400-98569600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:98566400-98569600	Weak transcription	Adipose Nuclei	Adipose
6	chr1:98566400-98570800	Enhancers	Fetal Brain Female	brain
7	chr1:98567600-98568800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:98567800-98568600	Enhancers	Brain Germinal Matrix	brain
9	chr1:98567800-98568600	Enhancers	A549	lung
10	chr1:98567800-98568600	Enhancers	NH-A	brain
11	chr1:98567800-98569000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:98567800-98569200	Enhancers	NHDF-Ad	bronchial
13	chr1:98567800-98569800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:98567800-98569800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:98567800-98570400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:98567800-98570600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:98567800-98570800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:98568000-98568600	Enhancers	Hela-S3	cervix
19	chr1:98568000-98569200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:98568000-98569200	Weak transcription	Osteobl	bone
21	chr1:98568200-98569200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr1:98568200-98569200	Weak transcription	NHLF	lung
23	chr1:98568200-98569400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:98568200-98569400	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:98568200-98569600	Weak transcription	NHEK	skin
26	chr1:98568200-98569800	Weak transcription	Fetal Stomach	stomach
27	chr1:98568400-98568800	Weak transcription	Fetal Brain Male	brain
28	chr1:98568400-98569000	Weak transcription	HSMM	muscle
29	chr1:98568400-98569400	Weak transcription	HMEC	breast
30	chr1:98568400-98569600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links