Variant report

Variant	rs61789788
Chromosome Location	chr1:45697919-45697920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1502340	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17394390	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17397799	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1938299	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2096435	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4660298	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4660299	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4660837	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4660838	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4660840	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58612171	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61788382	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61788383	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61788386	0.80[AMR][1000 genomes]
rs61788387	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788388	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788389	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788390	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788393	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788428	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61788429	0.93[ASN][1000 genomes]
rs61788430	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788436	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788438	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788439	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788440	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788441	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788447	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788449	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61788455	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61789766	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61789768	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789773	0.87[AMR][1000 genomes]
rs61789774	0.87[AMR][1000 genomes]
rs61789775	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789777	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789778	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789782	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61789785	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61789789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789808	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789809	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789814	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789816	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789817	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789818	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789819	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61789820	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61789821	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61789822	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61789826	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61789830	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529677	chr1:45179509-45748571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
2	nsv1002026	chr1:45187594-45758048	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	386 gene(s)	inside rSNPs	diseases
3	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
4	nsv998187	chr1:45677251-45732377	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1014509	chr1:45687523-45887501	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45697600-45698000	Enhancers	Osteobl	bone

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