Variant report

Variant	rs61793360
Chromosome Location	chr4:22477211-22477212
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11722097	0.89[ASN][1000 genomes]
rs56235800	0.95[EUR][1000 genomes]
rs7671689	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv878752	chr4:22414023-22501043	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22420600-22488000	Weak transcription	Aorta	Aorta
2	chr4:22433800-22479200	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:22450400-22484000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:22450400-22493200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:22456800-22479000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:22456800-22485000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:22462000-22493200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:22462400-22483600	Weak transcription	Liver	Liver
9	chr4:22462600-22478400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:22466400-22477600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr4:22466600-22484000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:22472200-22480200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr4:22472600-22484200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:22472600-22484400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:22472600-22486200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:22472800-22482400	Weak transcription	Ovary	ovary
17	chr4:22473000-22482400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:22473200-22487400	Weak transcription	Right Ventricle	heart
19	chr4:22473400-22484400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:22473600-22484200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:22474000-22483200	Weak transcription	Fetal Brain Female	brain
22	chr4:22474200-22477800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:22474200-22484000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:22474200-22486200	Weak transcription	Fetal Stomach	stomach
25	chr4:22474400-22479200	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:22474400-22484200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr4:22474400-22484400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:22474600-22478200	Enhancers	Osteobl	bone
29	chr4:22474600-22482400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr4:22474600-22484200	Weak transcription	HSMMtube	muscle
31	chr4:22474800-22478000	Enhancers	HUVEC	blood vessel
32	chr4:22474800-22482000	Weak transcription	Fetal Muscle Leg	muscle
33	chr4:22475000-22480000	Weak transcription	Primary T cells from cord blood	blood
34	chr4:22475000-22484000	Weak transcription	Left Ventricle	heart
35	chr4:22475000-22484800	Weak transcription	Fetal Intestine Large	intestine
36	chr4:22475000-22489400	Weak transcription	Lung	lung
37	chr4:22475200-22479600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:22475200-22480000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr4:22475200-22482400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:22475200-22484200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr4:22475200-22486000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr4:22476000-22478800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:22476400-22479000	Weak transcription	Fetal Intestine Small	intestine
44	chr4:22476600-22478800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr4:22476600-22478800	Weak transcription	Fetal Lung	lung
46	chr4:22476600-22482600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr4:22476600-22484400	Weak transcription	Psoas Muscle	Psoas
48	chr4:22476600-22485200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr4:22476600-22487200	Weak transcription	Small Intestine	intestine
50	chr4:22476800-22477600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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