Variant report

Variant	rs61793653
Chromosome Location	chr4:22681811-22681812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61792179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61793649	1.00[AMR][1000 genomes]
rs61793657	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22677200-22682200	Enhancers	Colon Smooth Muscle	Colon
2	chr4:22678600-22687000	Weak transcription	Thymus	Thymus
3	chr4:22678800-22687200	Weak transcription	Fetal Thymus	thymus
4	chr4:22679400-22682000	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:22679400-22682200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:22680000-22682400	Enhancers	Liver	Liver
7	chr4:22680000-22682600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:22680600-22682200	Enhancers	Adipose Nuclei	Adipose
9	chr4:22680800-22682000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:22680800-22682000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr4:22680800-22682200	Enhancers	HSMM	muscle
12	chr4:22680800-22682600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr4:22680800-22683200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr4:22681000-22682200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr4:22681000-22682400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr4:22681000-22682600	Enhancers	Primary T cells from cord blood	blood
17	chr4:22681200-22682000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:22681400-22682000	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr4:22681400-22682600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr4:22681400-22682800	Enhancers	HSMMtube	muscle
21	chr4:22681600-22682000	Weak transcription	Fetal Intestine Small	intestine
22	chr4:22681600-22682000	Enhancers	Fetal Lung	lung
23	chr4:22681600-22682400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:22681600-22682600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr4:22681800-22682000	Enhancers	Fetal Intestine Large	intestine
26	chr4:22681800-22682200	Enhancers	Primary hematopoietic stem cells	blood
27	chr4:22681800-22682200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:22681800-22682200	Enhancers	Fetal Muscle Leg	muscle
29	chr4:22681800-22682600	Enhancers	Primary B cells from cord blood	blood
30	chr4:22681800-22683200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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