Variant report

Variant	rs61793887
Chromosome Location	chr4:27920073-27920074
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2192542	1.00[AFR][1000 genomes]
rs61791079	0.82[EUR][1000 genomes]
rs61791082	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61793891	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61793892	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61793893	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61793894	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013877	chr4:27539626-28051576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv4282	chr4:27914655-27959474	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27917000-27923600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:27918000-27920400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:27918000-27921400	Enhancers	Brain Substantia Nigra	brain
4	chr4:27918200-27921000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:27918600-27922800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:27918800-27922600	Weak transcription	Fetal Lung	lung
7	chr4:27919600-27920400	Enhancers	Brain Anterior Caudate	brain
8	chr4:27919600-27920400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr4:27919600-27922200	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:27919800-27922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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