Variant report

Variant	rs61795163
Chromosome Location	chr3:158955278-158955279
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13061579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13063797	1.00[EUR][1000 genomes]
rs13065679	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13067585	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13082502	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13083138	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13083244	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13083887	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13085824	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13088547	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1448996	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17795417	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1839219	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34442071	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35150496	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7644770	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158952000-158957400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:158952800-158956000	Weak transcription	NHLF	lung
3	chr3:158953400-158957600	Enhancers	HSMMtube	muscle
4	chr3:158953600-158957800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:158954000-158957800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:158954200-158955400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:158954200-158955400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:158954400-158955400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:158954400-158957600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:158954600-158955600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:158955000-158955800	Weak transcription	HSMM	muscle
12	chr3:158955200-158955400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:158955200-158956400	Weak transcription	Osteobl	bone
14	chr3:158955200-158957400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:158955200-158968800	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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