Variant report

Variant	rs61798079
Chromosome Location	chr3:178496515-178496516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13073878	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34347909	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34405554	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34584446	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3924404	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71310305	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs71310306	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178482000-178507000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:178495000-178496600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:178495200-178496600	Enhancers	GM12878-XiMat	blood
4	chr3:178495200-178496800	Enhancers	HMEC	breast
5	chr3:178495200-178496800	Enhancers	HSMMtube	muscle
6	chr3:178495200-178496800	Enhancers	NHEK	skin
7	chr3:178495200-178497000	Enhancers	HSMM	muscle
8	chr3:178495400-178496800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:178495400-178496800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:178495800-178496600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:178496200-178496600	Enhancers	Left Ventricle	heart
12	chr3:178496200-178497000	Enhancers	Gastric	stomach
13	chr3:178496400-178502000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:178496400-178502600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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