Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11265583	0.82[AMR][1000 genomes]
rs12088460	0.80[AMR][1000 genomes]
rs12409590	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2501867	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2501871	0.83[EUR][1000 genomes]
rs2501875	0.83[EUR][1000 genomes]
rs2502813	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34740003	0.82[EUR][1000 genomes]
rs4255401	0.84[AMR][1000 genomes]
rs4271232	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4636484	0.83[AMR][1000 genomes]
rs4657002	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4657004	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4657005	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4657006	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4657007	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4657008	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4657009	0.84[AMR][1000 genomes]
rs6427583	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6427584	0.84[AMR][1000 genomes]
rs6681182	0.81[EUR][1000 genomes]
rs6690484	0.82[AMR][1000 genomes]
rs9651049	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161238200-161257600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:161243000-161261200	Weak transcription	Brain Substantia Nigra	brain
3	chr1:161243200-161264000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:161243400-161251400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:161244600-161256000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:161250400-161274200	Weak transcription	Fetal Stomach	stomach
7	chr1:161250600-161254000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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