Variant report

Variant	rs61802550
Chromosome Location	chr1:144567866-144567867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:144566036..144568858-chr1:149222714..149224750,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012104	chr1:144007818-144682096	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	260 gene(s)	inside rSNPs	diseases
2	nsv1006330	chr1:144007818-144849544	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	262 gene(s)	inside rSNPs	diseases
3	nsv1001989	chr1:144007818-144873327	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	265 gene(s)	inside rSNPs	diseases
4	nsv997949	chr1:144007818-144876884	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	265 gene(s)	inside rSNPs	diseases
5	nsv1010670	chr1:144007818-144880405	Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	265 gene(s)	inside rSNPs	diseases
6	nsv1010163	chr1:144007818-144884322	Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	265 gene(s)	inside rSNPs	diseases
7	nsv1014985	chr1:144007818-144949963	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
8	nsv1002373	chr1:144013582-144682096	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	258 gene(s)	inside rSNPs	diseases
9	nsv1007748	chr1:144015838-144682096	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	258 gene(s)	inside rSNPs	diseases
10	nsv524682	chr1:144034888-144617179	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
11	esv1828275	chr1:144274482-145098718	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
12	nsv1014641	chr1:144337917-144880405	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
13	nsv998833	chr1:144337917-144885032	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
14	nsv1009682	chr1:144471974-144876884	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
15	nsv1008142	chr1:144471974-144880405	Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
16	nsv1001693	chr1:144471974-145290292	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	311 gene(s)	inside rSNPs	diseases
17	nsv831292	chr1:144506093-144613511	Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	248 gene(s)	inside rSNPs	diseases
18	nsv831303	chr1:144523643-144617215	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	248 gene(s)	inside rSNPs	diseases
19	nsv872206	chr1:144544101-144881389	Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
20	nsv872207	chr1:144560355-144859086	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
21	nsv872208	chr1:144560355-144875799	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
22	nsv946241	chr1:144567624-144568375	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv946240	chr1:144567624-144578785	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:144567400-144568000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:144567400-144568000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr1:144567400-144568000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr1:144567400-144568000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr1:144567400-144568000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr1:144567400-144568000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr1:144567400-144568000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:144567400-144568000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:144567400-144568000	Enhancers	Primary B cells from peripheral blood	blood
10	chr1:144567400-144568000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr1:144567400-144568000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:144567400-144568000	Active TSS	Brain Germinal Matrix	brain
13	chr1:144567400-144568000	Active TSS	Fetal Brain Female	brain
14	chr1:144567400-144568000	Active TSS	Fetal Kidney	kidney
15	chr1:144567600-144568000	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr1:144567600-144568000	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr1:144567600-144568000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:144567600-144568000	Active TSS	Primary T cells from cord blood	blood
19	chr1:144567600-144568000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
20	chr1:144567600-144568000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:144567600-144568000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:144567600-144568000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr1:144567600-144568000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
24	chr1:144567600-144568000	Active TSS	Brain Anterior Caudate	brain
25	chr1:144567600-144568000	Enhancers	Pancreas	Pancrea
26	chr1:144567600-144568000	Enhancers	Right Atrium	heart
27	chr1:144567600-144568000	Enhancers	Stomach Smooth Muscle	stomach
28	chr1:144567600-144568000	Active TSS	Thymus	Thymus
29	chr1:144567600-144568000	Enhancers	HSMM	muscle
30	chr1:144567600-144568000	Flanking Active TSS	Osteobl	bone
31	chr1:144567800-144568000	Active TSS	H1 Cell Line	embryonic stem cell
32	chr1:144567800-144568000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
33	chr1:144567800-144568000	Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr1:144567800-144568000	Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr1:144567800-144568000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr1:144567800-144568000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr1:144567800-144568000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr1:144567800-144568000	Enhancers	Liver	Liver
39	chr1:144567800-144568000	Active TSS	Fetal Stomach	stomach
40	chr1:144567800-144568000	Active TSS	Fetal Thymus	thymus
41	chr1:144567800-144568000	Active TSS	Monocytes-CD14+_RO01746	blood
42	chr1:144567800-144568800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr1:144567800-144569000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr1:144567800-144569200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr1:144567800-144570800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr1:144567800-144572400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr1:144567800-144572400	Weak transcription	Placenta	Placenta
48	chr1:144567800-144572400	Weak transcription	NH-A	brain
49	chr1:144567800-144572600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr1:144567800-144572600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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