Variant report

Variant	rs61807082
Chromosome Location	chr1:171693485-171693486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12063955	1.00[AFR][1000 genomes]
rs12064421	1.00[AFR][1000 genomes]
rs12078093	1.00[AFR][1000 genomes]
rs12084255	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv12447	chr1:171556291-171726822	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1800458	chr1:171667663-171701129	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171665600-171705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:171665600-171708800	Weak transcription	Brain Angular Gyrus	brain
3	chr1:171666000-171705400	Weak transcription	Pancreas	Pancrea
4	chr1:171666800-171702400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:171668800-171705400	Weak transcription	Right Ventricle	heart
6	chr1:171668800-171708200	Weak transcription	Small Intestine	intestine
7	chr1:171669600-171705400	Weak transcription	Fetal Brain Male	brain
8	chr1:171674000-171696400	Weak transcription	HSMM	muscle
9	chr1:171674800-171696800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:171674800-171697200	Weak transcription	Ovary	ovary
11	chr1:171677200-171698800	Weak transcription	Aorta	Aorta
12	chr1:171679000-171693800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:171679000-171696000	Weak transcription	Fetal Intestine Large	intestine
14	chr1:171686000-171696800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:171686000-171699000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr1:171686400-171696800	Weak transcription	NH-A	brain
17	chr1:171686600-171695400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:171686600-171710400	Weak transcription	Esophagus	oesophagus
19	chr1:171686600-171710400	Weak transcription	Gastric	stomach
20	chr1:171686800-171695400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:171686800-171704600	Weak transcription	NHEK	skin
22	chr1:171687000-171696200	Weak transcription	Placenta	Placenta
23	chr1:171687000-171704600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:171687600-171696600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr1:171687600-171704600	Weak transcription	Colon Smooth Muscle	Colon
26	chr1:171687600-171708000	Weak transcription	K562	blood
27	chr1:171687800-171696400	Weak transcription	NHLF	lung
28	chr1:171688000-171695600	Weak transcription	Osteobl	bone
29	chr1:171688400-171698800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr1:171690800-171699000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:171691800-171696400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:171692000-171694000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr1:171692000-171694400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr1:171692400-171694200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr1:171692400-171695400	Weak transcription	NHDF-Ad	bronchial
36	chr1:171692400-171695600	Weak transcription	Fetal Thymus	thymus
37	chr1:171692400-171695800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr1:171692400-171696400	Weak transcription	Brain Hippocampus Middle	brain
39	chr1:171692400-171696600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr1:171692400-171697000	Weak transcription	Left Ventricle	heart
41	chr1:171692400-171705800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:171692400-171708400	Weak transcription	Brain Substantia Nigra	brain
43	chr1:171692400-171710400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:171692400-171710400	Weak transcription	Lung	lung
45	chr1:171692600-171693800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr1:171692600-171693800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:171692600-171694200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr1:171692600-171694800	Weak transcription	Fetal Stomach	stomach
49	chr1:171692600-171696000	Weak transcription	Fetal Muscle Leg	muscle
50	chr1:171692600-171696200	Weak transcription	Dnd41	blood

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