Variant report

Variant	rs61807763
Chromosome Location	chr1:172088225-172088226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11584664	0.84[ASN][1000 genomes]
rs11589349	0.84[ASN][1000 genomes]
rs16843855	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843860	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17277008	0.84[ASN][1000 genomes]
rs17346438	1.00[ASN][1000 genomes]
rs17346452	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346473	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350544	1.00[ASN][1000 genomes]
rs17350579	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350586	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17361789	0.84[ASN][1000 genomes]
rs4540689	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61805853	0.92[ASN][1000 genomes]
rs61807762	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61807784	0.84[ASN][1000 genomes]
rs61807786	0.84[ASN][1000 genomes]
rs61807787	0.84[ASN][1000 genomes]
rs6694089	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61807763	DNM3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172049400-172110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:172052400-172091600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172062400-172109200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:172069200-172102000	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:172077000-172096000	Weak transcription	Brain Substantia Nigra	brain
6	chr1:172077200-172110600	Weak transcription	Brain Angular Gyrus	brain
7	chr1:172077400-172099400	Weak transcription	Fetal Brain Female	brain
8	chr1:172079000-172090400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:172079400-172089800	Weak transcription	Fetal Stomach	stomach
10	chr1:172082000-172089600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:172085600-172097000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:172085800-172113400	Weak transcription	Pancreas	Pancrea
13	chr1:172087200-172093800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:172087400-172091400	Weak transcription	NHEK	skin
15	chr1:172088200-172089800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links