Variant report

Variant	rs61807804
Chromosome Location	chr1:172175697-172175698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv465650	chr1:172175115-172247127	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548192	chr1:172175115-172247127	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172169200-172176000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172173800-172176400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:172175000-172176000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:172175200-172175800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:172175400-172176000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:172175600-172176000	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:172175600-172176200	Enhancers	Primary B cells from cord blood	blood
8	chr1:172175600-172176400	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:172175600-172176400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links