Variant report

Variant	rs61808916
Chromosome Location	chr14:70708186-70708187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10442644	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12116551	0.81[EUR][1000 genomes]
rs12116683	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12117362	0.81[EUR][1000 genomes]
rs12117559	0.82[EUR][1000 genomes]
rs12117884	0.88[EUR][1000 genomes]
rs12118611	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12118645	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12120960	0.82[EUR][1000 genomes]
rs12121185	0.88[EUR][1000 genomes]
rs12121994	0.88[EUR][1000 genomes]
rs12122348	0.81[EUR][1000 genomes]
rs12124064	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12124738	0.80[EUR][1000 genomes]
rs12125057	0.81[EUR][1000 genomes]
rs12125501	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12129132	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12129567	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12130858	0.81[EUR][1000 genomes]
rs12142784	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12143193	0.88[EUR][1000 genomes]
rs12143790	0.81[EUR][1000 genomes]
rs12143963	0.81[EUR][1000 genomes]
rs12145146	0.88[EUR][1000 genomes]
rs12145193	0.81[EUR][1000 genomes]
rs12145226	0.88[EUR][1000 genomes]
rs12723917	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12728614	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12731520	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12733626	0.87[EUR][1000 genomes]
rs12736817	0.81[EUR][1000 genomes]
rs12738167	0.88[EUR][1000 genomes]
rs12739337	0.87[EUR][1000 genomes]
rs12740501	0.81[EUR][1000 genomes]
rs12743588	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12744362	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12745978	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12750161	0.81[EUR][1000 genomes]
rs12751407	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12751571	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12753816	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17349467	0.80[EUR][1000 genomes]
rs1936533	0.81[EUR][1000 genomes]
rs2040446	0.80[EUR][1000 genomes]
rs2157597	0.81[EUR][1000 genomes]
rs2420014	0.87[EUR][1000 genomes]
rs2420016	0.88[EUR][1000 genomes]
rs34176173	0.80[EUR][1000 genomes]
rs34248820	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34408435	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35091267	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35220898	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35249110	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35271076	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35375125	0.87[EUR][1000 genomes]
rs35393101	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35447001	0.80[EUR][1000 genomes]
rs35458577	0.80[EUR][1000 genomes]
rs35539429	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36154866	0.87[EUR][1000 genomes]
rs3766090	0.88[EUR][1000 genomes]
rs4589164	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4656669	0.82[EUR][1000 genomes]
rs61806242	0.81[EUR][1000 genomes]
rs61806244	0.81[EUR][1000 genomes]
rs61808870	0.82[EUR][1000 genomes]
rs61808940	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71635617	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700059	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7516097	0.81[EUR][1000 genomes]
rs7522781	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv983840	chr14:70696676-70714926	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61808916	NME7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70697400-70719400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:70701800-70721200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70707000-70711800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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