Variant report

Variant	rs61809190
Chromosome Location	chr1:180981886-180981887
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180958996..180961747-chr1:180978821..180982179,3	K562	blood:
2	chr1:180981578..180983592-chr1:181056387..181059227,2	MCF-7	breast:
3	chr1:180976308..180980103-chr1:180980772..180983671,4	K562	blood:
4	chr1:180973122..180974952-chr1:180980947..180983036,2	K562	blood:
5	chr1:180979963..180982436-chr1:180989539..180991619,3	K562	blood:
6	chr1:180980680..180982850-chr1:181114267..181117577,3	K562	blood:
7	chr1:180976610..180978803-chr1:180979756..180981941,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162783	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61809195	1.00[ASN][1000 genomes]
rs7519345	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	esv3342865	chr1:180933678-181018012	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3383831	chr1:180937224-181029755	Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1011081	chr1:180973159-181135953	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	95 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180940400-180988400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:180959200-180990800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:180960600-180985200	Weak transcription	Stomach Mucosa	stomach
4	chr1:180973800-180982400	Weak transcription	Spleen	Spleen
5	chr1:180973800-180988200	Weak transcription	Fetal Brain Male	brain
6	chr1:180973800-180989600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:180973800-180990600	Weak transcription	Colonic Mucosa	Colon
8	chr1:180973800-180990800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:180974000-180990800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:180974400-180990000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:180974600-180982000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:180974600-180982400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr1:180974600-180982400	Weak transcription	HMEC	breast
14	chr1:180974600-180982600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:180974600-180982800	Weak transcription	Fetal Intestine Small	intestine
16	chr1:180974600-180984000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:180974600-180984200	Weak transcription	HUVEC	blood vessel
18	chr1:180974600-180986600	Weak transcription	Fetal Intestine Large	intestine
19	chr1:180974600-180988200	Weak transcription	Gastric	stomach
20	chr1:180974600-180990000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:180974600-180990600	Weak transcription	Liver	Liver
22	chr1:180974600-180990600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr1:180974600-180990600	Weak transcription	Fetal Muscle Leg	muscle
24	chr1:180974800-180982000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr1:180974800-180982000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:180974800-180982000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:180974800-180982000	Weak transcription	Thymus	Thymus
28	chr1:180974800-180982200	Weak transcription	HepG2	liver
29	chr1:180974800-180982400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:180974800-180982600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr1:180974800-180983800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr1:180974800-180989800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr1:180974800-180990800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:180975000-180983600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr1:180975000-180989600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr1:180975000-180990000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr1:180975200-180990200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr1:180975400-180982000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr1:180975600-180983400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr1:180976400-180987000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr1:180976800-180982600	Weak transcription	Primary B cells from cord blood	blood
42	chr1:180977800-180982200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr1:180978600-180982600	Enhancers	Adipose Nuclei	Adipose
44	chr1:180978600-180983200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr1:180978800-180982200	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr1:180978800-180986200	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr1:180979000-180982200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr1:180979000-180982600	Enhancers	NHDF-Ad	bronchial
49	chr1:180979000-180982600	Enhancers	Osteobl	bone
50	chr1:180979400-180982800	Enhancers	Placenta	Placenta

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