Variant report

Variant	rs61809301
Chromosome Location	chr1:180578956-180578957
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:180578916..180585462-chr1:180598253..180604360,12	K562	blood:
2	chr1:180574903..180577606-chr1:180578788..180581202,6	K562	blood:
3	chr1:180553221..180556764-chr1:180577641..180580493,4	K562	blood:
4	chr1:180528108..180531443-chr1:180577371..180581395,4	K562	blood:
5	chr1:180578726..180581333-chr1:180585723..180589157,4	K562	blood:
6	chr1:180568988..180574820-chr1:180577415..180583388,9	K562	blood:
7	chr1:180578692..180581890-chr1:180600234..180603494,4	K562	blood:
8	chr1:180557940..180560116-chr1:180578867..180581193,3	K562	blood:
9	chr1:180529943..180534795-chr1:180578153..180581956,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143324	Chromatin interaction
ENSG00000236719	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11806607	1.00[ASN][1000 genomes]
rs17373273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61809278	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61809279	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61809280	1.00[AFR][1000 genomes]
rs61809299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61809300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61809302	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61809309	1.00[AFR][1000 genomes]
rs61811194	1.00[AFR][1000 genomes]
rs61811196	1.00[AFR][1000 genomes]
rs72720984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7519345	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180564800-180579600	Weak transcription	Right Atrium	heart
2	chr1:180568200-180579800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:180573400-180579000	Weak transcription	Left Ventricle	heart
4	chr1:180575600-180579200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:180575800-180579400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:180575800-180580000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:180575800-180580200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:180576000-180579400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:180576000-180579400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:180576200-180579400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:180576600-180579400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:180578000-180587200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:180578400-180579200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr1:180578400-180580600	Enhancers	Pancreas	Pancrea
15	chr1:180578600-180582000	Flanking Active TSS	K562	blood
16	chr1:180578800-180579000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:180578800-180579200	Enhancers	Adipose Nuclei	Adipose
18	chr1:180578800-180579200	Enhancers	Fetal Intestine Small	intestine
19	chr1:180578800-180579600	Enhancers	HepG2	liver
20	chr1:180578800-180579800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:180578800-180580400	Enhancers	Placenta	Placenta
22	chr1:180578800-180580600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:180578800-180580800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:180578800-180580800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr1:180578800-180581000	Enhancers	HMEC	breast
26	chr1:180578800-180581200	Enhancers	Fetal Lung	lung
27	chr1:180578800-180581600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:180578800-180581600	Enhancers	NHEK	skin
29	chr1:180578800-180581800	Enhancers	Fetal Heart	heart

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