Variant report

Variant	rs61809502
Chromosome Location	chr1:161946492-161946493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17408026	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17409485	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17415553	1.00[AMR][1000 genomes]
rs17416424	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17416633	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17416920	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17417198	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17417647	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17418028	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17418130	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17418389	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17448307	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17448571	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17450717	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17450862	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17450917	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17450980	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2490419	1.00[AMR][1000 genomes]
rs2490421	1.00[AMR][1000 genomes]
rs2499837	1.00[AMR][1000 genomes]
rs35284289	1.00[AMR][1000 genomes]
rs36108216	1.00[AMR][1000 genomes]
rs41271949	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5014880	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61809495	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61809496	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61809498	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61809500	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61809501	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv464206	chr1:161798239-162067447	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv470744	chr1:161798239-162067447	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv548077	chr1:161798239-162067447	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1007108	chr1:161925814-162002917	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv831747	chr1:161926367-162103311	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv548078	chr1:161941219-161980502	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161904800-161956600	Weak transcription	Fetal Brain Male	brain
2	chr1:161932400-161955400	Weak transcription	Brain Substantia Nigra	brain
3	chr1:161933600-161953400	Weak transcription	HSMMtube	muscle
4	chr1:161937600-161954800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:161939200-161956600	Weak transcription	Fetal Intestine Small	intestine
6	chr1:161940800-161952200	Weak transcription	Aorta	Aorta
7	chr1:161942200-161951000	Weak transcription	Lung	lung
8	chr1:161943000-161951000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:161944200-161953800	Weak transcription	Esophagus	oesophagus
10	chr1:161944400-161951800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:161944400-161952200	Weak transcription	NHDF-Ad	bronchial
12	chr1:161944400-161953400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:161944400-161953600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:161944400-161964000	Weak transcription	Ovary	ovary
15	chr1:161944600-161952200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:161944600-161953400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr1:161944600-161953400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr1:161945000-161950600	Weak transcription	Adipose Nuclei	Adipose
19	chr1:161945200-161952800	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:161945400-161951600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:161946000-161948200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr1:161946000-161948200	Weak transcription	Fetal Muscle Leg	muscle

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