Variant report

Variant	rs61811246
Chromosome Location	chr1:180867726-180867727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180866617..180870349-chr1:180876247..180878371,3	MCF-7	breast:
2	chr1:180865980..180867777-chr1:180893565..180896342,2	K562	blood:
3	chr1:180863020..180866201-chr1:180866515..180869291,3	MCF-7	breast:
4	chr1:180866045..180867808-chr1:180990167..180992875,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225857	Chromatin interaction
ENSG00000135823	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61811194	1.00[AFR][1000 genomes]
rs61811196	1.00[AFR][1000 genomes]
rs61811228	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61811249	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180805800-180881000	Weak transcription	Aorta	Aorta
2	chr1:180824000-180880800	Weak transcription	Right Ventricle	heart
3	chr1:180828600-180867800	Weak transcription	HSMM	muscle
4	chr1:180835800-180870400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:180841000-180867800	Weak transcription	Lung	lung
6	chr1:180844200-180872200	Weak transcription	Esophagus	oesophagus
7	chr1:180845800-180869000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:180847400-180875400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:180851600-180867800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:180852000-180870400	Weak transcription	A549	lung
11	chr1:180853800-180867800	Weak transcription	Fetal Stomach	stomach
12	chr1:180857600-180869600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:180858400-180870600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:180861200-180880800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:180863600-180868000	Weak transcription	Fetal Thymus	thymus
16	chr1:180863600-180868000	Weak transcription	Right Atrium	heart
17	chr1:180864600-180870200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:180867000-180868000	Enhancers	Ovary	ovary
19	chr1:180867000-180868600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:180867200-180868200	Enhancers	Adipose Nuclei	Adipose
21	chr1:180867200-180869200	Enhancers	H9 Cell Line	embryonic stem cell
22	chr1:180867400-180867800	Enhancers	Duodenum Mucosa	Duodenum
23	chr1:180867400-180867800	Enhancers	Fetal Intestine Small	intestine
24	chr1:180867400-180868000	Enhancers	HSMMtube	muscle
25	chr1:180867400-180868200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:180867400-180868200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:180867400-180868200	Enhancers	Osteobl	bone
28	chr1:180867400-180868400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr1:180867400-180868400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr1:180867400-180868400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:180867400-180868400	Enhancers	Fetal Lung	lung
32	chr1:180867400-180868600	Enhancers	NHDF-Ad	bronchial
33	chr1:180867400-180868800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:180867400-180868800	Enhancers	Placenta	Placenta
35	chr1:180867400-180869000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr1:180867400-180869200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr1:180867400-180869200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr1:180867400-180869200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr1:180867400-180869600	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr1:180867600-180867800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:180867600-180868000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:180867600-180868000	Enhancers	Brain Germinal Matrix	brain
43	chr1:180867600-180868400	Enhancers	Fetal Heart	heart
44	chr1:180867600-180868600	Enhancers	Fetal Muscle Leg	muscle
45	chr1:180867600-180868800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr1:180867600-180868800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr1:180867600-180869400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr1:180867600-180869400	Enhancers	Fetal Muscle Trunk	muscle
49	chr1:180867600-180869400	Weak transcription	Pancreas	Pancrea
50	chr1:180867600-180869600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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