Variant report

Variant	rs61813897
Chromosome Location	chr1:103318075-103318076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61812154	1.00[EUR][1000 genomes]
rs61812155	1.00[EUR][1000 genomes]
rs61812683	1.00[EUR][1000 genomes]
rs61813928	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103311200-103319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:103316400-103319400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:103316600-103318400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:103316600-103319400	Enhancers	Fetal Muscle Leg	muscle
5	chr1:103317000-103318400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:103317000-103318400	Enhancers	Osteobl	bone
7	chr1:103317000-103318600	Enhancers	HSMMtube	muscle
8	chr1:103317200-103318200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:103317200-103318200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:103317400-103318800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:103317800-103318400	Enhancers	Placenta	Placenta
12	chr1:103317800-103319200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:103317800-103319400	Enhancers	Brain Germinal Matrix	brain
14	chr1:103317800-103321800	Weak transcription	NHDF-Ad	bronchial
15	chr1:103318000-103319000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:103318000-103319200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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