Variant report

Variant	rs61815147
Chromosome Location	chr1:151827147-151827148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1056037	0.89[ASN][1000 genomes]
rs1129117	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12567049	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16833584	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16833599	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16833604	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2279503	0.89[ASN][1000 genomes]
rs2879130	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60166269	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6587625	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs745055	0.80[ASN][1000 genomes]
rs7524706	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7556386	0.90[ASN][1000 genomes]
rs923547	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs998500	0.86[ASN][1000 genomes]
rs998501	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008033	chr1:151785029-151843154	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151813400-151828600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:151814800-151827400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:151819200-151827200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:151819200-151847600	Weak transcription	Thymus	Thymus
5	chr1:151820600-151827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:151821000-151830600	Weak transcription	Right Atrium	heart
7	chr1:151821400-151832400	Weak transcription	Spleen	Spleen
8	chr1:151821600-151845600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr1:151824000-151827800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:151824400-151828200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:151824600-151827800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:151824800-151828400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:151826200-151827600	Weak transcription	Fetal Lung	lung
14	chr1:151826400-151827400	Weak transcription	Hela-S3	cervix
15	chr1:151826400-151827400	Weak transcription	NHEK	skin
16	chr1:151826400-151829000	Weak transcription	Placenta	Placenta
17	chr1:151826400-151846200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:151827000-151828800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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