Variant report

Variant	rs61817981
Chromosome Location	chr1:151213031-151213032
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151209513..151214380-chr1:151215209..151220595,6	MCF-7	breast:
2	1:151203965-151215310..1:151402394-151411623	GM12878	blood:
3	chr1:151210527..151213187-chr1:151216256..151217892,2	K562	blood:
4	chr1:151210801..151214011-chr1:151214626..151217300,3	MCF-7	breast:
5	1:151171193-151178589..1:151203965-151215310	GM12878	blood:
6	chr1:151203345..151206149-chr1:151211372..151213479,2	MCF-7	breast:
7	chr1:151161951..151163675-chr1:151211160..151213826,2	K562	blood:
8	chr1:151211452..151213818-chr1:151375380..151378253,2	K562	blood:
9	1:151203965-151215310..1:151592347-151603110	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000143398	Chromatin interaction
ENSG00000238711	Chromatin interaction
ENSG00000206635	Chromatin interaction
ENSG00000163159	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs41268532	1.00[AFR][1000 genomes]
rs4971036	1.00[AFR][1000 genomes]
rs61819218	1.00[AFR][1000 genomes]
rs61819220	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
5	nsv831559	chr1:151109459-151239921	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv831570	chr1:151129020-151281778	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	106 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151173200-151227200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:151178200-151223400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:151189600-151223600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:151190400-151223200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:151190400-151223400	Strong transcription	Fetal Thymus	thymus
6	chr1:151191800-151223000	Strong transcription	Fetal Stomach	stomach
7	chr1:151193400-151223000	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr1:151194400-151223600	Strong transcription	Fetal Muscle Trunk	muscle
9	chr1:151195000-151223000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:151195200-151227200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:151195600-151223000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:151195600-151223200	Strong transcription	Placenta	Placenta
13	chr1:151196000-151223200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:151196200-151222800	Strong transcription	Thymus	Thymus
15	chr1:151196200-151223200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr1:151196600-151222600	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:151196600-151223200	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr1:151196800-151222800	Strong transcription	Fetal Muscle Leg	muscle
19	chr1:151197000-151222800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:151197000-151222800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr1:151197000-151223000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:151197200-151223200	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:151197400-151223200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr1:151197400-151223600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:151199200-151222600	Strong transcription	Dnd41	blood
26	chr1:151199200-151223000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr1:151199400-151222400	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr1:151199400-151222600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr1:151199400-151222600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr1:151199400-151223000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr1:151199400-151223200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr1:151199600-151213200	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr1:151199600-151222200	Strong transcription	HepG2	liver
34	chr1:151199600-151222400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:151199600-151222400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:151199600-151223200	Strong transcription	Liver	Liver
37	chr1:151199600-151223400	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr1:151199800-151213400	Strong transcription	HUVEC	blood vessel
39	chr1:151199800-151218800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr1:151199800-151222400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr1:151199800-151222400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr1:151199800-151223000	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr1:151199800-151223200	Strong transcription	Adipose Nuclei	Adipose
44	chr1:151200200-151213400	Strong transcription	Ovary	ovary
45	chr1:151200400-151213200	Strong transcription	Aorta	Aorta
46	chr1:151201400-151223200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr1:151202200-151222400	Strong transcription	Stomach Smooth Muscle	stomach
48	chr1:151202400-151217200	Strong transcription	Brain Germinal Matrix	brain
49	chr1:151202400-151221800	Strong transcription	Hela-S3	cervix
50	chr1:151202400-151222400	Strong transcription	Duodenum Mucosa	Duodenum

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