Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10047048	0.81[AMR][1000 genomes]
rs10800937	0.81[AMR][1000 genomes]
rs10920680	0.81[AMR][1000 genomes]
rs1143860	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1148610	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1148612	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1148614	0.87[ASN][1000 genomes]
rs1148615	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1171044	0.85[EUR][1000 genomes]
rs1171045	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1171046	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1171338	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1185689	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12072689	0.81[AMR][1000 genomes]
rs12072690	0.81[AMR][1000 genomes]
rs12093349	0.83[AMR][1000 genomes]
rs12406050	0.81[AMR][1000 genomes]
rs12407537	0.81[AMR][1000 genomes]
rs3849278	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4399162	0.81[AMR][1000 genomes]
rs60812740	0.81[AMR][1000 genomes]
rs6665930	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548532	chr1:189758772-190371671	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1013402	chr1:190197674-190332464	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv535246	chr1:190197674-190332464	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv430013	chr1:190288297-190351677	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190319000-190319400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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