Variant report

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61819234	1.00[AFR][1000 genomes]
rs61819235	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221259800-221270000	Weak transcription	Adipose Nuclei	Adipose
2	chr1:221260800-221264000	Enhancers	NHLF	lung
3	chr1:221261200-221263400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:221261200-221263800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:221261200-221263800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:221261200-221264000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:221261200-221264000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:221261200-221264000	Enhancers	NHDF-Ad	bronchial
9	chr1:221262000-221263200	Enhancers	Hela-S3	cervix
10	chr1:221262200-221264000	Enhancers	HSMM	muscle
11	chr1:221262400-221263400	Enhancers	HUVEC	blood vessel
12	chr1:221262400-221263800	Enhancers	Osteobl	bone
13	chr1:221262600-221263200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:221262600-221263400	Enhancers	NH-A	brain
15	chr1:221262600-221263800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:221262600-221264000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:221262800-221263400	Flanking Active TSS	A549	lung
18	chr1:221262800-221263600	Weak transcription	Placenta	Placenta
19	chr1:221262800-221267400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:221263000-221263400	Weak transcription	HSMMtube	muscle

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