Variant report

Variant	rs61819971
Chromosome Location	chr1:113418938-113418939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:113417890..113419473-chr1:113495009..113497982,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10399593	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10857979	0.89[ASN][1000 genomes]
rs10857981	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10857982	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10857983	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11102559	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11102562	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11102565	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11102568	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12025191	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12028967	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12037621	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12043035	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1216538	0.94[ASN][1000 genomes]
rs1539625	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2002402	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2360009	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2884871	0.84[ASN][1000 genomes]
rs2996295	0.92[ASN][1000 genomes]
rs4301628	0.85[AMR][1000 genomes]
rs4839273	0.82[AMR][1000 genomes]
rs57549167	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61819997	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6670866	0.87[ASN][1000 genomes]
rs6682142	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002971	chr1:112924725-113740584	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv535059	chr1:112924725-113740584	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
3	nsv1010276	chr1:113123932-113740584	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv533295	chr1:113167645-113589588	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv1012119	chr1:113214869-113759081	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv535060	chr1:113214869-113759081	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
7	nsv529238	chr1:113229946-113759080	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
8	nsv818378	chr1:113263711-113434818	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv1008434	chr1:113288282-113447426	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv997426	chr1:113288282-113639507	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
11	nsv1004102	chr1:113295805-113551210	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
12	esv3399982	chr1:113358580-113542255	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
13	nsv999915	chr1:113360145-113684833	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
14	esv18293	chr1:113375437-113852815	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
15	esv3362439	chr1:113376621-113450321	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:113412200-113420200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:113412200-113420200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:113415000-113424600	Weak transcription	Right Atrium	heart
4	chr1:113415600-113421000	Weak transcription	Colonic Mucosa	Colon
5	chr1:113415600-113423400	Weak transcription	Osteobl	bone
6	chr1:113415800-113420400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:113415800-113420400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:113415800-113420800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:113415800-113421000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:113415800-113422000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:113415800-113423200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr1:113416000-113420200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:113416000-113420200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr1:113416000-113420200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:113416000-113420200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:113416000-113420400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:113416000-113420600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr1:113416000-113423200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:113416000-113424600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:113416200-113421000	Weak transcription	K562	blood
21	chr1:113416600-113420200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr1:113417000-113421000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:113417000-113424400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:113417200-113419600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:113417200-113420200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr1:113417200-113420600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:113417200-113421000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:113417200-113421200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr1:113417200-113421600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:113417200-113423600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:113417800-113423600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:113418000-113423400	Weak transcription	NHEK	skin
33	chr1:113418000-113423600	Weak transcription	HMEC	breast
34	chr1:113418200-113420400	Weak transcription	Placenta	Placenta

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