Variant report

Variant	rs61820754
Chromosome Location	chr1:196438244-196438245
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs35928059	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61819887	1.00[AFR][1000 genomes]
rs61820755	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72732236	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196420000-196460800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:196429200-196450400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:196430800-196439600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:196433600-196442200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:196434200-196450200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:196434200-196459200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:196434400-196446800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:196434600-196450200	Weak transcription	Liver	Liver
9	chr1:196434600-196459600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:196434800-196440800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:196436400-196451000	Weak transcription	Fetal Stomach	stomach
12	chr1:196436400-196485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:196437000-196447800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:196437400-196467800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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