Variant report

Variant	rs61825191
Chromosome Location	chr1:221990525-221990526
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11577677	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11590053	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17010889	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3010850	0.89[EUR][1000 genomes]
rs4418610	0.96[EUR][1000 genomes]
rs4551601	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4639769	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61825193	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61825195	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7514382	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7515604	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7544656	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9441877	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9441974	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9441979	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469786	chr1:221855871-222040335	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482867	chr1:221855871-222040335	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv873201	chr1:221956626-222007535	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221967400-222009800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:221984600-221997200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:221985800-221991200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:221989000-221991000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:221989600-221990600	Enhancers	HSMM	muscle
6	chr1:221989600-221990800	Enhancers	NHEK	skin
7	chr1:221989600-221991000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:221989600-221991600	Enhancers	HMEC	breast
9	chr1:221989800-221990600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:221989800-221990800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:221989800-221990800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:221989800-221990800	Enhancers	Osteobl	bone
13	chr1:221989800-221991000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:221989800-221991200	Enhancers	NHDF-Ad	bronchial
15	chr1:221989800-221991600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:221990000-221990600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:221990000-221990800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr1:221990000-221991000	Enhancers	NH-A	brain
19	chr1:221990000-221991200	Enhancers	NHLF	lung
20	chr1:221990000-221991400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:221990000-221991600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr1:221990200-221990600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:221990200-221990600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:221990200-221990600	Enhancers	Hela-S3	cervix
25	chr1:221990200-221990800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr1:221990200-221991000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr1:221990400-221990600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr1:221990400-221990800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:221990400-221991200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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