Variant report

Variant	rs61825673
Chromosome Location	chr1:228755707-228755708
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXP2	chr1:228755607-228755874	PFSK-1	brain:	n/a	n/a
2	SIN3AK20	chr1:228755490-228756122	SK-N-SH	brain:	n/a	n/a
3	CTCF	chr1:228755699-228756163	K562	blood:	n/a	n/a
4	SP1	chr1:228754614-228756180	A549	lung:	n/a	chr1:228755408-228755418 chr1:228755408-228755418 chr1:228755535-228755545
5	MYBL2	chr1:228754476-228756446	HepG2	liver:	n/a	n/a
6	JUND	chr1:228755634-228755786	HepG2	liver:	n/a	n/a
7	POLR2A	chr1:228743903-228763119	PANC-1	pancreas:	n/a	n/a
8	TCF3	chr1:228755595-228755808	GM12878	blood:	n/a	n/a
9	JUND	chr1:228744099-228759006	A549	lung:	n/a	chr1:228748791-228748805 chr1:228747728-228747737 chr1:228753273-228753287 chr1:228744309-228744323 chr1:228746550-228746564 chr1:228745487-228745496 chr1:228755514-228755528 chr1:228751032-228751046 chr1:228758886-228758895 chr1:228749969-228749978 chr1:228752210-228752219 chr1:228754451-228754460 chr1:228757729-228757743
10	SIN3AK20	chr1:228754640-228756357	A549	lung:	n/a	n/a
11	YY1	chr1:228755530-228756151	A549	lung:	n/a	chr1:228755595-228755604
12	PBX3	chr1:228755654-228755774	GM12878	blood:	n/a	n/a
13	SIN3AK20	chr1:228755584-228756247	A549	lung:	n/a	n/a
14	NFIC	chr1:228755491-228755894	GM12878	blood:	n/a	n/a
15	SP1	chr1:228754542-228756134	A549	lung:	n/a	chr1:228755408-228755418 chr1:228755408-228755418 chr1:228755535-228755545
16	CBX3	chr1:228755550-228756714	K562	blood:	n/a	n/a
17	CTCF	chr1:228755033-228756371	K562	blood:	n/a	chr1:228755652-228755661 chr1:228756232-228756245 chr1:228755649-228755662
18	FOXA2	chr1:228743895-228782766	A549	lung:	n/a	n/a
19	POLR2A	chr1:228755624-228756065	HepG2	liver:	n/a	n/a
20	POLR2A	chr1:228755627-228755800	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr1:228754497-228756486	PFSK-1	brain:	n/a	n/a
22	POLR2A	chr1:228752325-228758678	SK-N-MC	brain:	n/a	n/a
23	POLR2A	chr1:228743920-228757394	PFSK-1	brain:	n/a	n/a
24	REST	chr1:228755536-228756014	SK-N-SH	brain:	n/a	n/a
25	REST	chr1:228755547-228756063	SK-N-SH	brain:	n/a	n/a
26	SIX5	chr1:228743910-228770094	A549	lung:	n/a	n/a
27	POU2F2	chr1:228755641-228755872	GM12878	blood:	n/a	n/a
28	POU2F2	chr1:228755664-228755772	GM12878	blood:	n/a	n/a
29	SIN3AK20	chr1:228755640-228755958	SK-N-SH	brain:	n/a	n/a
30	TCF3	chr1:228755584-228755989	GM12878	blood:	n/a	n/a
31	POLR2A	chr1:228754717-228756041	SK-N-MC	brain:	n/a	n/a
32	CBX3	chr1:228755385-228756425	K562	blood:	n/a	n/a
33	MYBL2	chr1:228755512-228756392	HepG2	liver:	n/a	n/a
34	POLR2A	chr1:228743910-228779025	PANC-1	pancreas:	n/a	n/a
35	CEBPB	chr1:228755466-228755997	GM12878	blood:	n/a	n/a
36	HEY1	chr1:228755634-228755791	K562	blood:	n/a	n/a
37	USF1	chr1:228755658-228755768	HepG2	liver:	n/a	n/a
38	PAX5	chr1:228755631-228755786	GM12878	blood:	n/a	chr1:228755695-228755704

Variant related genes	Relation type
RNA5S4	TF binding region
RNA5S5	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32853	chr1:227880116-228806209	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	nsv1013500	chr1:228459134-228849601	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv827075	chr1:228716554-228783674	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
4	nsv945355	chr1:228716611-228784016	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	29 gene(s)	inside rSNPs	diseases
5	nsv511124	chr1:228742457-228780671	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island	18 gene(s)	inside rSNPs	diseases
6	esv19715	chr1:228742638-228783674	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
7	esv3425415	chr1:228742829-228783527	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
8	nsv827086	chr1:228742962-228783035	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
9	nsv820567	chr1:228742962-228783403	Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
10	nsv827097	chr1:228742962-228783403	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
11	esv3331974	chr1:228743029-228783527	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
12	esv3342484	chr1:228743029-228783527	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
13	esv3382956	chr1:228743029-228783527	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
14	esv3445359	chr1:228743029-228783527	Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
15	esv3450984	chr1:228743029-228783527	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
16	esv1816306	chr1:228743784-228781208	Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island	17 gene(s)	inside rSNPs	diseases
17	esv1823022	chr1:228744778-228780896	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	17 gene(s)	inside rSNPs	diseases
18	esv1849885	chr1:228744778-228780896	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	17 gene(s)	inside rSNPs	diseases
19	nsv160594	chr1:228754472-228756686	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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