Variant report

Variant	rs61825793
Chromosome Location	chr1:224690204-224690205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:224683423..224687942-chr1:224688283..224691740,8	K562	blood:
2	chr1:224688139..224690298-chr1:225044581..225047366,2	K562	blood:
3	chr1:224348304..224349923-chr1:224689007..224690690,2	K562	blood:
4	chr1:224688210..224692730-chr1:224708810..224713777,4	K562	blood:
5	chr1:224622250..224624534-chr1:224688167..224691066,2	MCF-7	breast:
6	chr1:224645897..224648212-chr1:224688548..224690344,2	K562	blood:
7	chr1:224679447..224681226-chr1:224689931..224692404,2	MCF-7	breast:
8	chr1:224621492..224623034-chr1:224689907..224692360,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000162923	Chromatin interaction
ENSG00000143786	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61825794	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8868	chr1:224383023-224752531	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224685200-224695800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:224686600-224691000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr1:224686600-224691000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:224686600-224691200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:224686600-224691200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr1:224686800-224690600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr1:224686800-224691000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr1:224686800-224691000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:224686800-224691000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:224687200-224690400	Weak transcription	Fetal Kidney	kidney
11	chr1:224687200-224690600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:224687400-224690400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:224687400-224690400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:224687400-224691000	Weak transcription	HSMMtube	muscle
15	chr1:224687800-224692600	Enhancers	Fetal Thymus	thymus
16	chr1:224688400-224690400	Enhancers	K562	blood
17	chr1:224688600-224694400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:224688800-224690600	Weak transcription	HSMM	muscle
19	chr1:224688800-224690800	Weak transcription	Primary T cells from cord blood	blood
20	chr1:224689000-224690800	Enhancers	Dnd41	blood
21	chr1:224689200-224691200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr1:224689200-224692000	Enhancers	Thymus	Thymus
23	chr1:224689400-224691000	Enhancers	NHEK	skin
24	chr1:224689400-224691600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:224689400-224691800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:224689400-224692000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:224689400-224692000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:224689400-224692200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr1:224689600-224690400	Enhancers	Colonic Mucosa	Colon
30	chr1:224689600-224690600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr1:224689600-224690600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr1:224689600-224690800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr1:224689600-224690800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:224689600-224690800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:224689600-224690800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr1:224689600-224691000	Enhancers	Brain Hippocampus Middle	brain
37	chr1:224689600-224691000	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr1:224689600-224691200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
39	chr1:224689600-224691600	Enhancers	Left Ventricle	heart
40	chr1:224689600-224691800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr1:224689600-224692000	Enhancers	Esophagus	oesophagus
42	chr1:224689600-224692000	Enhancers	Fetal Stomach	stomach
43	chr1:224689600-224692400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr1:224689600-224692400	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr1:224689600-224692400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr1:224689600-224692400	Enhancers	Right Ventricle	heart
47	chr1:224689600-224692600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr1:224689600-224692600	Enhancers	Fetal Muscle Leg	muscle
49	chr1:224689600-224692600	Enhancers	Pancreas	Pancrea
50	chr1:224689600-224692600	Enhancers	Right Atrium	heart

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