Variant report

Variant	rs61825983
Chromosome Location	chr1:224986902-224986903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61852074	1.00[AMR][1000 genomes]
rs61852090	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224980600-224988200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:224981200-224989600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:224981400-224988200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:224986600-224987000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:224986600-224987000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr1:224986600-224987200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr1:224986800-224987200	Enhancers	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links