Variant report

Variant	rs61826755
Chromosome Location	chr1:173434400-173434401
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr1:173434367-173434572	K562	blood:	n/a	n/a
2	TEAD4	chr1:173434376-173434721	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173433519..173435552-chr1:173450186..173452414,2	K562	blood:
2	chr1:173422573..173424450-chr1:173433493..173435623,2	K562	blood:

Variant related genes	Relation type
ENSG00000203739	TF binding region
ENSG00000117592	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12029440	0.86[EUR][1000 genomes]
rs34129563	0.95[EUR][1000 genomes]
rs61828881	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173419000-173439000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr1:173423800-173436600	Weak transcription	NHDF-Ad	bronchial
3	chr1:173423800-173442400	Weak transcription	NH-A	brain
4	chr1:173425200-173442400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:173429400-173439800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:173430400-173435000	Weak transcription	Brain Angular Gyrus	brain
7	chr1:173430400-173437200	Weak transcription	NHLF	lung
8	chr1:173430400-173437800	Weak transcription	Esophagus	oesophagus
9	chr1:173430400-173439200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:173430400-173442400	Weak transcription	Gastric	stomach
11	chr1:173430400-173442800	Weak transcription	Pancreas	Pancrea
12	chr1:173430400-173444400	Weak transcription	Right Ventricle	heart
13	chr1:173430600-173438000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:173430600-173438800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:173430600-173439000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:173430600-173439800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:173430600-173442600	Weak transcription	Aorta	Aorta
18	chr1:173430600-173443200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:173430600-173444400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:173430800-173437800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:173430800-173439400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr1:173430800-173439800	Weak transcription	Fetal Stomach	stomach
23	chr1:173430800-173445000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:173431000-173435400	Weak transcription	Adipose Nuclei	Adipose
25	chr1:173431000-173436400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:173431000-173436600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:173431000-173436800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr1:173431000-173436800	Weak transcription	Osteobl	bone
29	chr1:173431000-173438600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr1:173431000-173438800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr1:173431000-173439000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr1:173431000-173439200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr1:173431000-173439600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:173431000-173439600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:173431000-173439600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr1:173431000-173439800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr1:173431000-173439800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr1:173431000-173439800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr1:173431000-173442400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:173431000-173442400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr1:173431000-173442400	Weak transcription	Hela-S3	cervix
42	chr1:173431000-173442600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr1:173431000-173442600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr1:173431000-173444400	Weak transcription	Left Ventricle	heart
45	chr1:173431200-173436200	Weak transcription	Primary B cells from cord blood	blood
46	chr1:173431200-173436200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr1:173431200-173436200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr1:173431200-173439800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr1:173431200-173439800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr1:173431200-173442400	Weak transcription	Stomach Smooth Muscle	stomach

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