Variant report

Variant	rs61826941
Chromosome Location	chr17:28231336-28231337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10157872	0.80[EUR][1000 genomes]
rs10158096	0.87[EUR][1000 genomes]
rs10494493	0.87[EUR][1000 genomes]
rs12063802	0.80[EUR][1000 genomes]
rs12563930	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12565810	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12568182	0.91[EUR][1000 genomes]
rs16847257	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16847271	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16847402	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16847450	0.84[EUR][1000 genomes]
rs34952844	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35216639	0.92[EUR][1000 genomes]
rs41524947	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57353443	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61826909	0.91[EUR][1000 genomes]
rs61826913	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61826917	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61826918	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61826921	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61826923	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61826924	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61826925	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61826942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61826949	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61826950	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61826951	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61826952	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61826953	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61826956	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61826957	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61826959	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61828062	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61828064	0.89[EUR][1000 genomes]
rs61828065	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61828068	0.90[EUR][1000 genomes]
rs61828081	0.90[EUR][1000 genomes]
rs61828087	0.84[EUR][1000 genomes]
rs61828088	0.84[EUR][1000 genomes]
rs7523516	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3506122	chr17:27986597-28247088	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv3506123	chr17:27986597-28247088	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:28210800-28232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr17:28211200-28232400	Weak transcription	Thymus	Thymus
3	chr17:28211800-28232400	Weak transcription	Primary B cells from cord blood	blood
4	chr17:28217800-28232200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr17:28220400-28232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr17:28222000-28232400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr17:28222200-28232400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr17:28225200-28232200	Weak transcription	Fetal Intestine Small	intestine
9	chr17:28226800-28232400	Weak transcription	Aorta	Aorta
10	chr17:28227200-28232400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:28228800-28232400	Weak transcription	Right Ventricle	heart
12	chr17:28229000-28231600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr17:28229000-28232200	Weak transcription	Brain Germinal Matrix	brain
14	chr17:28229000-28232400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr17:28229000-28232600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr17:28229000-28232800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr17:28229000-28233000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr17:28229200-28231600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr17:28229200-28232400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr17:28229200-28232400	Weak transcription	Fetal Thymus	thymus
21	chr17:28229200-28232400	Weak transcription	Left Ventricle	heart
22	chr17:28229200-28232400	Weak transcription	Right Atrium	heart
23	chr17:28229200-28232600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr17:28229400-28231400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr17:28229400-28242200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr17:28229600-28231600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr17:28229800-28238200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr17:28230200-28232400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr17:28230600-28232800	Enhancers	Primary T cells from cord blood	blood
30	chr17:28230800-28245400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr17:28231200-28231400	Enhancers	Psoas Muscle	Psoas
32	chr17:28231200-28231800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr17:28231200-28233200	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr17:28231200-28251600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr17:28231200-28255400	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links