Variant report

Variant	rs61827277
Chromosome Location	chr1:228597512-228597513
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr1:228597479-228597837	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:228597187..228600883-chr1:228673177..228676006,4	MCF-7	breast:
2	chr1:228595693..228597981-chr1:228649489..228652456,2	MCF-7	breast:
3	chr1:228531850..228533459-chr1:228596981..228599691,2	K562	blood:
4	chr1:228596814..228599008-chr1:228623663..228627095,3	MCF-7	breast:
5	chr1:228596410..228598829-chr1:228602336..228604216,2	MCF-7	breast:
6	chr1:228589639..228603795-chr1:228638211..228648676,43	MCF-7	breast:
7	chr1:228597505..228599215-chr1:228614261..228616187,2	MCF-7	breast:
8	chr1:228585219..228604537-chr1:228641966..228650471,45	MCF-7	breast:
9	chr1:228353490..228355544-chr1:228595880..228598740,2	MCF-7	breast:

No data

Variant related genes	Relation type
TRIM11	TF binding region
ENSG00000168159	Chromatin interaction
ENSG00000181201	Chromatin interaction
ENSG00000266174	Chromatin interaction
ENSG00000162931	Chromatin interaction
ENSG00000181873	Chromatin interaction
ENSG00000196890	Chromatin interaction
ENSG00000181218	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61825304	1.00[AMR][1000 genomes]
rs61825700	1.00[AMR][1000 genomes]
rs61827280	0.95[EUR][1000 genomes]
rs61827302	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32853	chr1:227880116-228806209	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	nsv826908	chr1:227895386-228691100	Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
3	nsv523935	chr1:228038124-228681749	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv873255	chr1:228254753-228684779	Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	133 gene(s)	inside rSNPs	diseases
5	nsv827019	chr1:228314167-228651020	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
6	nsv873270	chr1:228442663-228699477	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
7	nsv1009891	chr1:228450763-228742676	Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
8	nsv517545	chr1:228456147-228685999	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
9	nsv1013500	chr1:228459134-228849601	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
10	nsv468271	chr1:228464248-228601638	Bivalent Enhancer Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv468283	chr1:228464248-228601638	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv468294	chr1:228464248-228601638	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv549295	chr1:228464248-228601638	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv470780	chr1:228464248-228606965	Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv873279	chr1:228494790-228681195	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
16	nsv873280	chr1:228500627-228603029	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	nsv873281	chr1:228505739-228656780	Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
18	esv1808261	chr1:228509427-228674518	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
19	esv2829948	chr1:228509427-228687948	Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
20	nsv508697	chr1:228540037-228622614	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
21	nsv549296	chr1:228585837-228720480	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:228595000-228598400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:228595200-228598000	Weak transcription	Gastric	stomach
3	chr1:228595200-228601600	Weak transcription	Aorta	Aorta
4	chr1:228595400-228598600	Enhancers	Placenta	Placenta
5	chr1:228595600-228597800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:228595600-228598000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:228595600-228598000	Enhancers	Spleen	Spleen
8	chr1:228595600-228598200	Enhancers	HepG2	liver
9	chr1:228595600-228601200	Weak transcription	Fetal Lung	lung
10	chr1:228595600-228601600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:228595600-228602200	Weak transcription	Fetal Intestine Large	intestine
12	chr1:228595600-228602400	Weak transcription	Primary B cells from cord blood	blood
13	chr1:228595600-228603000	Weak transcription	Brain Substantia Nigra	brain
14	chr1:228595600-228603200	Weak transcription	HSMMtube	muscle
15	chr1:228595800-228598000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:228595800-228601600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr1:228595800-228602400	Weak transcription	Small Intestine	intestine
18	chr1:228595800-228603200	Weak transcription	Brain Anterior Caudate	brain
19	chr1:228596000-228597600	Enhancers	Fetal Heart	heart
20	chr1:228596000-228597600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:228596000-228598000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:228596000-228598000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:228596000-228598600	Enhancers	K562	blood
24	chr1:228596000-228601000	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:228596000-228601600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:228596000-228601600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr1:228596000-228601800	Weak transcription	Fetal Thymus	thymus
28	chr1:228596000-228601800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:228596000-228602600	Weak transcription	Left Ventricle	heart
30	chr1:228596000-228602600	Weak transcription	Ovary	ovary
31	chr1:228596000-228603000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr1:228596000-228603400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr1:228596200-228597600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr1:228596200-228597600	Weak transcription	Hela-S3	cervix
35	chr1:228596200-228597800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:228596200-228598000	Weak transcription	Adipose Nuclei	Adipose
37	chr1:228596200-228598200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:228596200-228598200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr1:228596200-228599000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr1:228596200-228599400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:228596200-228601400	Weak transcription	HUVEC	blood vessel
42	chr1:228596200-228603000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr1:228596200-228603000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr1:228596200-228603000	Weak transcription	Right Ventricle	heart
45	chr1:228596200-228603400	Weak transcription	NHEK	skin
46	chr1:228596400-228597600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr1:228596400-228597600	Weak transcription	Fetal Brain Female	brain
48	chr1:228596400-228597600	Weak transcription	NHDF-Ad	bronchial
49	chr1:228596400-228597600	Weak transcription	Osteobl	bone
50	chr1:228596400-228597800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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