Variant report

Variant	rs61827994
Chromosome Location	chr1:170273131-170273132
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10753803	0.87[ASN][1000 genomes]
rs10800510	0.85[ASN][1000 genomes]
rs10800511	0.85[ASN][1000 genomes]
rs11577543	0.88[ASN][1000 genomes]
rs11582930	0.86[ASN][1000 genomes]
rs11802454	0.85[ASN][1000 genomes]
rs11802884	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12404913	0.84[ASN][1000 genomes]
rs12725915	0.86[ASN][1000 genomes]
rs12738543	0.83[ASN][1000 genomes]
rs12745998	0.82[ASN][1000 genomes]
rs2095134	0.82[ASN][1000 genomes]
rs2151244	0.82[ASN][1000 genomes]
rs2151245	0.82[ASN][1000 genomes]
rs2184042	0.83[ASN][1000 genomes]
rs34335232	0.85[ASN][1000 genomes]
rs55834059	0.87[ASN][1000 genomes]
rs56185457	0.88[ASN][1000 genomes]
rs61827996	0.81[ASN][1000 genomes]
rs6700678	0.82[ASN][1000 genomes]
rs7522187	0.83[ASN][1000 genomes]
rs7524746	0.85[ASN][1000 genomes]
rs7538465	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170270400-170279200	Weak transcription	Aorta	Aorta
2	chr1:170271200-170273200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:170271600-170273400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:170271800-170274200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:170271800-170278600	Weak transcription	Right Atrium	heart
6	chr1:170272600-170275400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:170273000-170273200	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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