Variant report

Variant	rs61828063
Chromosome Location	chr1:174676038-174676039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174669078..174670967-chr1:174674536..174677161,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152061	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61826880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61826919	1.00[AFR][1000 genomes]
rs61826945	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61826946	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174607600-174677800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:174646800-174677600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:174646800-174680400	Weak transcription	Ovary	ovary
4	chr1:174651800-174677400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:174652400-174677400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr1:174652400-174678800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr1:174660600-174677600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:174665800-174677400	Weak transcription	Fetal Intestine Small	intestine
9	chr1:174665800-174680000	Weak transcription	Fetal Intestine Large	intestine
10	chr1:174665800-174682600	Weak transcription	Left Ventricle	heart
11	chr1:174666000-174677800	Weak transcription	Primary T cells from cord blood	blood
12	chr1:174668400-174682600	Weak transcription	Gastric	stomach
13	chr1:174669600-174684000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr1:174671400-174676800	Weak transcription	NHDF-Ad	bronchial
15	chr1:174672600-174682600	Weak transcription	Right Ventricle	heart
16	chr1:174673000-174679400	Weak transcription	GM12878-XiMat	blood
17	chr1:174673800-174678000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:174674800-174679000	Weak transcription	Thymus	Thymus
19	chr1:174675200-174677400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr1:174675800-174678200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr1:174676000-174676800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr1:174676000-174677400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:174676000-174677600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:174676000-174678000	Strong transcription	Primary B cells from peripheral blood	blood
25	chr1:174676000-174678200	Strong transcription	Primary T cells fromperipheralblood	blood

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